PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 123aa MW: 14369.5 Da PI: 10.7112 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.6 | 2.8e-09 | 97 | 117 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 Dg++WrKYGqK+++g ++pr Do017799.1 97 YDGHQWRKYGQKHINGLKHPR 117 59******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-9 | 81 | 117 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-8 | 90 | 117 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-7 | 98 | 117 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.616 | 98 | 117 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MRQQQQLLTK LRAIVVPLLP ADDPSAELVV HLLEDVLRCN VNVISQLERG NTYYLLPAVR 60 KSTIHDRNVE QVQKSFNRRR RKNKDISRSL VTDTPHYDGH QWRKYGQKHI NGLKHPRLTD 120 TAL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017799.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980128.1 | 3e-28 | probable WRKY transcription factor 26 | ||||
Refseq | XP_025805423.1 | 3e-28 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A1E5W6A9 | 3e-85 | A0A1E5W6A9_9POAL; Uncharacterized protein | ||||
STRING | Si027876m | 9e-28 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13325 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-06 | WRKY DNA-binding protein 46 |