PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017688.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 478aa MW: 51015 Da PI: 6.3948

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017688.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.5	1.3e-27	184	238	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFveaveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ Do017688.1 184 KVKVDWTPELHRRFVEAVEQL-GIDKAVPSRILEIMGIQCLTRHNIASHLQKYRSH 238 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.088	181	240	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	182	241	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-17	183	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-26	184	238	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-7	187	236	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MLEVSALRSP SKAADPRGFV GDHVGFPTSG SDCDDCFMVD DNLLLDYIDF SCDVPFFDAD 60 GDILPDLEVD PTELLAEFDG CSGAEAKAPD VKQEAGPEQE QRVTTTIEDD IEKRLLGKDE 120 KKGTNNKQNG DELQGSSAVT TEDDSGSGAG SSDSKSSASA SAGGHSKKKP SATAAGNNSN 180 GKRKVKVDWT PELHRRFVEA VEQLGIDKAV PSRILEIMGI QCLTRHNIAS HLQKYRSHRK 240 HLMAREAEAA TWAQKRQMYA AAAGSAGAPP RKLDAAAAAG PWVVPTIGFP PLPMAQPPPP 300 LCRPLHVWGH PPTTAAVEAA AAAAPAPTML PVWPRHLAPP RPLPPWAPMD PAYWHQQYNA 360 AARKWGPAAA LTQGTPCVAP QMPRFPVPGM VPHPMYRPTM MVPQPPPPPT TSSKLAELQL 420 QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSMDSVMS ELHKQGIPKV PPGQLASG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MLEVSALRSP SKAADPRGFV GDHVGFPTSG SDCDDCFMVD DNLLLDYIDF SCDVPFFDAD  60
GDILPDLEVD PTELLAEFDG CSGAEAKAPD VKQEAGPEQE QRVTTTIEDD IEKRLLGKDE  120
KKGTNNKQNG DELQGSSAVT TEDDSGSGAG SSDSKSSASA SAGGHSKKKP SATAAGNNSN  180
GKRKVKVDWT PELHRRFVEA VEQLGIDKAV PSRILEIMGI QCLTRHNIAS HLQKYRSHRK  240
HLMAREAEAA TWAQKRQMYA AAAGSAGAPP RKLDAAAAAG PWVVPTIGFP PLPMAQPPPP  300
LCRPLHVWGH PPTTAAVEAA AAAAPAPTML PVWPRHLAPP RPLPPWAPMD PAYWHQQYNA  360
AARKWGPAAA LTQGTPCVAP QMPRFPVPGM VPHPMYRPTM MVPQPPPPPT TSSKLAELQL  420
QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSMDSVMS ELHKQGIPKV PPGQLASG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-15	189	240	6	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017688.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF318579	1e-86	AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds.
GenBank	BT062838	1e-86	BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds.
GenBank	EU953316	1e-86	EU953316.1 Zea mays clone 1398500 transcription factor ZmGLK1 mRNA, complete cds.
GenBank	EU956792	1e-86	EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds.
GenBank	KJ727689	1e-86	KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818980.1	0.0	probable transcription factor GLK2 isoform X3
Swissprot	Q5NAN5	1e-125	GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBL	A0A1E5VGQ4	0.0	A0A1E5VGQ4_9POAL; Putative transcription factor GLK2
STRING	Si001336m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	7e-58	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]