PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017526.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 598aa    MW: 62822.8 Da    PI: 6.3469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017526.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06218239526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f ++  C++Gd C +aHg
  Do017526.1 218 PCPEFKKGAGCRRGDMCEYAHG 239
                 8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.13E-949132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-1150137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.03752123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.59188123IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MADASEAATA VSARLLELAA DDDTAALGDL LAAHPSLADE PAPWYSPARG AEPMTPLMVA  60
AAYGSVACLD VLLSTPHLAD PNRASPASLS TALHLAAAGG ASSAPAAVSR LLAAGADPTL  120
LDHLQRRPSD LVALPPNALP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPEELRPLYV TSAGSRSAME MAAAMGIGLP  300
SPGASFTPPL SPSGGGSGVA GAWPQPNVPA LCLPGSAGNL HLSRLRTSLS ARSMAVDELL  360
SSADYDGLVG SPASVRSARG KTLVPSNLDD LFSAEMAGAA ASHSPRYSDQ GGAAFSPTRK  420
AAMLNQFQQQ QSLLSPRATA AMAIPEPVSP MSSRLLAALT QREKMQQQTL RSMSSRDLGS  480
GASVLVGSPV TSSWSKWGIP SGTPDWGADN EELGHLKRSS SFELRSGANG DEPDLSWVNT  540
LVKEPTPEKP SINGKTAMGS IGTLGEAASH ESIGGGEDDT AGVIGGWLEQ LQLDEMVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A1E5VQF60.0A0A1E5VQF6_9POAL; Zinc finger CCCH domain-containing protein 67
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-148CCCH-type zinc finger protein with ARM repeat domain