PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do017444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 27509.5 Da PI: 9.4347 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.3e-09 | 175 | 199 | 21 | 46 |
TT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqk 46 + W+ Ia++++ gRt++++k++w++ Do017444.1 175 QNKWSIIASKLP-GRTDNDVKNYWNT 199 457*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0068 | 138 | 203 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.98E-8 | 174 | 206 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-13 | 174 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-6 | 174 | 199 | No hit | No description |
PROSITE profile | PS50090 | 6.888 | 174 | 201 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.7E-6 | 176 | 199 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPGRILFRAR RHRQEPSPLV AWGWRGVEWS GQWSSITDLD WFLLKLLHKV KVNLLFVQGD 60 DLCAICDNGG DVTCDIHFET KEGPNGYMQR AWDELEGPDG RVIPRDRILI YCTKHDIIKK 120 LGTPKRNHII FPKKLRVPKT LVDPPNEEDI PKEAELLDNG SPEPSLSPWQ VASGQNKWSI 180 IASKLPGRTD NDVKNYWNTK LKKKAKAPAA FAAPATLPPA ALSPASSSVT SSSGDVRFAG 240 YPQPQAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do017444.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679430 | 8e-40 | HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 9e-08 | myb domain protein 103 |