PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016847.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 444aa    MW: 47570 Da    PI: 8.3252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016847.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17129178155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Do016847.1 129 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178
                 78*******************......55************************998 PP
2AP242.81.3e-13221271155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Do016847.1 221 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 271
                 89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16129187IPR016177DNA-binding domain
PfamPF008472.0E-9129178IPR001471AP2/ERF domain
PROSITE profilePS5103217.754130186IPR001471AP2/ERF domain
SMARTSM003804.6E-31130192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-17130186IPR001471AP2/ERF domain
CDDcd000187.66E-11130185No hitNo description
CDDcd000188.84E-26221281No hitNo description
SuperFamilySSF541714.84E-17221280IPR016177DNA-binding domain
PfamPF008473.1E-9221271IPR001471AP2/ERF domain
PROSITE profilePS5103216.081222279IPR001471AP2/ERF domain
SMARTSM003801.2E-32222285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16222280IPR001471AP2/ERF domain
PRINTSPR003671.5E-6223234IPR001471AP2/ERF domain
PRINTSPR003671.5E-6261281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVLDLNAESP TAGSASATSS SSGVAGGGGG GGGGFFRFDL LGGSPDEEGC SSSPPVVTRQ  60
LFPSPHRDAV AASPASEGSP PTEVAGPWAR RASDLGASAA AAAQGLVVAV PSSPAAGKKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLD  180
ADINFHLKDY DDDLKQMRNW TKEEFVHILR RQSTGFARGS SKYRGVTLHK CGRWEARMGQ  240
LLGKKYIYLG LFDSEIEAAR AYDRAAIRFN GPDAVTNFDS SSYDGDVPLP PEIEKDGVDE  300
DILDLNLRIS QPNVHDPKSN GILTGFGLNC NSPEASSSFL SQPISPQWLV HPHSTLVPPQ  360
QPHLYAYPSP GFIVNLREAP PMEQRPQPGP QSFPGWAWQM QGSPAPLLPT TAASSGFSTA  420
GVPPPSGPRP FAGHHHQLRF PPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016847.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882490.0BT088249.1 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds.
GenBankEU9741860.0EU974186.1 Zea mays clone 442332 floral homeotic protein mRNA, complete cds.
GenBankFJ6866970.0FJ686697.1 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds.
GenBankKJ7269390.0KJ726939.1 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804503.10.0floral homeotic protein APETALA 2-like isoform X2
SwissprotQ8H4430.0AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A1E5V8N50.0A0A1E5V8N5_9POAL; Floral homeotic protein APETALA 2
STRINGPavir.Ba03394.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-93related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]