PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016676.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 381aa    MW: 41644.2 Da    PI: 7.2393
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016676.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.4e-1188128340
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                 ++k +rr+++NReAAr+sR+RKka+i++Le+   k ++Le+
  Do016676.1  88 RDKIQRRLAQNREAARKSRLRKKAYIQNLETsrmKLAQLEQ 128
                 7899*************************983224444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-886132No hitNo description
SMARTSM003383.1E-586150IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.95688130IPR004827Basic-leucine zipper domain
PfamPF001701.0E-788127IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-790132No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PfamPF141444.2E-28174248IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGIYERQRHL VAAGGVWGDP FLPDADAVVV PVAAVATPVN AVVRPVDVAF EADVKFGNHL  60
VLAQDDAVPV DEAPSSDSFG HDDATRPRDK IQRRLAQNRE AARKSRLRKK AYIQNLETSR  120
MKLAQLEQEL TMARRQQQGA HAGGGGLLAL PVDPRVTAFE LEYGRWVEDQ KKQAAELRAA  180
LQSEASEFHL RFLVDAGLAH YDALFDAKSR AARSDAFFVL SGVWRAPAER FFLWIGGFRP  240
SELLKVLAPQ LDPLTEQQAS SVRALQNTAR QLEDALSQGM NKLQQTLVDA LLTVDSPDDA  300
AAAGAGGGGY AARQMASAVG KLDDLVSFVD QADHLRQQTL RNMNKILTLP QAARGLLALA  360
EYCQRLRALS SLWAARPREP A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820316.10.0transcription factor TGA2.3-like isoform X2
SwissprotQ392371e-111TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A1E5WJS20.0A0A1E5WJS2_9POAL; Transcription factor TGA1
STRINGSi013962m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-104bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]