PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 162aa MW: 17753.2 Da PI: 10.4262 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 96 | 153 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ Do016614.1 96 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 153 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.8E-18 | 46 | 92 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-34 | 82 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 89 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 92 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 94 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-27 | 96 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MSSARSFLSS LSMDGSVASL DGKSSSFHLI GGPAMSDPVN TQQAPRRRCT GRGEDGTGKC 60 AVTGRCHCSK RSRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC 120 SSVRGCPARK HVERCVDDSS MLIVTYEGEH NHTRMPTQSA QA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 87 | 156 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016614.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943679 | 1e-159 | EU943679.1 Zea mays clone 1677305 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795417.1 | 1e-116 | protein WRKY1-like isoform X1 | ||||
Swissprot | Q93WU6 | 5e-71 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | A0A1E5VM15 | 1e-116 | A0A1E5VM15_9POAL; Protein WRKY1 | ||||
TrEMBL | A0A2S3IK15 | 1e-114 | A0A2S3IK15_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C3I7 | 1e-114 | A0A2T7C3I7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03991.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 5e-58 | WRKY DNA-binding protein 74 |
Publications ? help Back to Top | |||
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