PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 551aa MW: 60419.6 Da PI: 5.7143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 120 | 166 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f++L +++P a K +K+++L ++eY+++L+ Do016572.1 120 EHVIAERKRRETMHHQFSTLASIIPDiA------KTDKVSVLGSTIEYVHHLK 166 5999**********************88......*****************95 PP | |||||||
2 | HLH | 25.1 | 3.3e-08 | 389 | 431 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f++L +++P sK++ L +++Y+++L+ Do016572.1 389 HVIAERKRREKMHHQFATLASIVPDI--------SKVSLLGSTIDYVHHLR 431 899**********************8........8**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.897 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 120 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 120 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.47E-10 | 121 | 170 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-14 | 121 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.36E-8 | 377 | 435 | No hit | No description |
PROSITE profile | PS50888 | 8.696 | 384 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 388 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-12 | 389 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-6 | 389 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 390 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.507 | 483 | 551 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MQQLAESLAN ELWSEPPQEQ QQEQQDEPQQ FILSPTGFPF LGNLNNNASG SCPTVVSAAG 60 GSDNTFSFTD GSSGPLNFTA QEETRRQSVA TDSTVRKCFS SSSTMEKKSS GRKACSSVKE 120 HVIAERKRRE TMHHQFSTLA SIIPDIAKTD KVSVLGSTIE YVHHLKDMLR TLQEQQHQHS 180 SSSADESPTT LNARCCIGSE DDGAASPKIE ADVRGTMILL RVVCREKKGS LDIALDHIEV 240 HTEMNSSANH RWLAELENED LGELDFIDPL SMEQLAKSLA DELWKQPTQE LQVQLDQRPQ 300 GTYPTGFSFL GDIGKSYAEG FPKAIGAGGD DSMFSFIDGN SKSKQLSFSA RQPKLEGNAS 360 AIAGRFGTPS PMTMETKGSR RESLGVHEHV IAERKRREKM HHQFATLASI VPDISKVSLL 420 GSTIDYVHHL RGRLKTLQEE HCQRTGSTAE SSPPLDARCC IGSEDDGDES PKIEADVRGT 480 TVLLRVVCRE KKGVLIMVLK ELEKHGLSIT NTNVLPLTES SLNIIVTAQI EDGSSTAVEL 540 VNNLNSALKR F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 397 | ERKRRE |
2 | 393 | 398 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016572.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796991.1 | 1e-168 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | A0A2T7C914 | 1e-169 | A0A2T7C914_9POAL; Uncharacterized protein | ||||
STRING | Si039393m | 1e-142 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13896 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-22 | bHLH family protein |