PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 548aa MW: 59528.8 Da PI: 5.7333 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 398 | 443 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq Do016454.1 398 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 443 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-17 | 391 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.31E-13 | 391 | 447 | No hit | No description |
PROSITE profile | PS50888 | 17.212 | 393 | 442 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-17 | 395 | 452 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-9 | 398 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-14 | 399 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MAGGELMMSR HQPHQACGHR SPEFHCTQSY TKASITNLST VDIFSLQKPF FEEHFGKRLR 60 VPFLLVNMDY SAGSYFSSWP VNSASESYSL ADGSVESFGG EGSMPPSSYF MTARSDQTLK 120 FSGHEQESTM HTNEQLTYTG TGNADLLPAE ILSGDKLPEN LLELQRLQNN GNLQSNLVNP 180 GVLQHTTMPG GFHPQLNTSG LSEMPHALSS SIDSNSSEVS AFLTDVNAVS SVSTLCPTFQ 240 NPSSFLEPLN LEAFSFQGAQ NDTIWNKRSH PNGNMPVFDN AALASLNDSK EFISSKLPSF 300 ASVQETNLAA SGFKTQKQEP NPMCNVPIPT FTARNQMAVT ATQGQQIPQK MPSWINENKS 360 ECPVSHPSDV QTQANSAGNG VGVKPRVRAR RGQATDPHSI AERLRREKIS DRMKNLQDLV 420 PNSNKADKAS MLDEIIDYVK FLQLQVKVLS MSRLGAPGAV LPLLAESQTE GCHSQPLSAP 480 ANARGLLDVQ DTEDALAFEE EVVKLMETSI TSAMQYLQNK GLCLMPVALA SAISTQKGVP 540 AAAICPER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016454.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812392.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A1E5UK13 | 0.0 | A0A1E5UK13_9POAL; Transcription factor bHLH69 | ||||
STRING | Si006332m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 5e-53 | LJRHL1-like 2 |