PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016259.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 470aa MW: 53040.4 Da PI: 4.9373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016259.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.7	2.5e-25	84	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+++GF r+ +s++sk ++e+ ++++fvCs+eg +++k++ + +++r+r++ r gC+a+++v +e +++w+v+kle+ HnH+l Do016259.1 84 FYNEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKKQAspdEATRKRERMSMREGCNAMMEVVRE-SDHWVVSKLEKAHNHDL 174 *******************8777652789*****9999998888888999************99.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-22	84	174	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.14	301	337	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-9	308	334	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0014	312	339	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
LTVMEGERTE GDELIDDYVD CLMSLDTNAR PGHSDGLILG ASTVEGAVGG GTESDAMRDF 60 ASPEDPKEPA VGMTFESDEA AKAFYNEYAR RLGFPFRVGR SRRSKGTEEV LVMKRFVCSR 120 EGMYKKKKQA SPDEATRKRE RMSMREGCNA MMEVVRESDH WVVSKLEKAH NHDLGACSAN 180 IGYLRTREVS PTWKLETVND FYKKYFNTKT TLEVFLNQFN LSMASQYEAE ARADMDAYLN 240 KTTTKTASLI EKQAASTYTK AVFSKFQEEF TESLGFIIQK TEDGCVSKYS ITKDEDPSET 300 FYVTYNALNK MASCSCKYFE FSGILCRHIL GVYIIVDPRT LPPDYFLKRW TRKARDDDAL 360 LEENNNHHDE DPSQSITSRY NVLCVDAIRC AEKGAGSEAV YKAAKDILQK AYQEIIACER 420 NPGWGSQRDA ININEDVTID DAMNDQSMPD SGRKVTNLLG QFLDSSWSPV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

LTVMEGERTE GDELIDDYVD CLMSLDTNAR PGHSDGLILG ASTVEGAVGG GTESDAMRDF  60
ASPEDPKEPA VGMTFESDEA AKAFYNEYAR RLGFPFRVGR SRRSKGTEEV LVMKRFVCSR  120
EGMYKKKKQA SPDEATRKRE RMSMREGCNA MMEVVRESDH WVVSKLEKAH NHDLGACSAN  180
IGYLRTREVS PTWKLETVND FYKKYFNTKT TLEVFLNQFN LSMASQYEAE ARADMDAYLN  240
KTTTKTASLI EKQAASTYTK AVFSKFQEEF TESLGFIIQK TEDGCVSKYS ITKDEDPSET  300
FYVTYNALNK MASCSCKYFE FSGILCRHIL GVYIIVDPRT LPPDYFLKRW TRKARDDDAL  360
LEENNNHHDE DPSQSITSRY NVLCVDAIRC AEKGAGSEAV YKAAKDILQK AYQEIIACER  420
NPGWGSQRDA ININEDVTID DAMNDQSMPD SGRKVTNLLG QFLDSSWSPV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016259.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC169378	0.0	AC169378.2 Sorghum bicolor clone SB_BBc0007L02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700148.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700149.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700150.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5WN04	0.0	A0A1E5WN04_9POAL; Protein FAR1-RELATED SEQUENCE 3 (Fragment)
STRING	Pavir.Cb01881.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-41	FAR1-related sequence 3