PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016252.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 1000aa    MW: 111113 Da    PI: 5.597
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016252.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.52e-56211362117
        CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                 l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+yw
  Do016252.1  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRTYW 119
                 5679*********************************************************************************************** PP

        CG-1 101 lLeeelekivlvhylev 117
                 lLee + +ivlvhyle 
  Do016252.1 120 LLEEGFMNIVLVHYLEI 136
                 **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.73616142IPR005559CG-1 DNA-binding domain
SMARTSM010764.2E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.5E-6403490IPR013783Immunoglobulin-like fold
PfamPF018331.1E-5404477IPR002909IPT domain
SuperFamilySSF812966.47E-18404490IPR014756Immunoglobulin E-set
SuperFamilySSF484032.02E-17581696IPR020683Ankyrin repeat-containing domain
CDDcd002041.54E-14582694No hitNo description
PROSITE profilePS5029716.945585696IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.2E-18586697IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-7608697IPR020683Ankyrin repeat-containing domain
SMARTSM002480.028635664IPR002110Ankyrin repeat
PROSITE profilePS500888.897635667IPR002110Ankyrin repeat
SMARTSM00248460674703IPR002110Ankyrin repeat
SuperFamilySSF525406.37E-8809860IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.14809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682811839IPR000048IQ motif, EF-hand binding site
PfamPF006120.0054811830IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633833857IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4835854IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MAEIRKYAMS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDAGY LGEMQPTPAN FTNNFVSHND ISSAFNETGA GLRGNPKTPI  240
DSVRFGESFP EYPGGFTEPT LYSSVATVGN NLDDSLQTFM SEALYTNNLT QKELDALSAA  300
GITSSQAEND GYTDQSARYP LLKQSSLDLF KIESDGLKKF DSFSRWMSSE LAEVADLDIK  360
SSSDAFWSTT ETVNVADGSG LPINEQLDAF VVSPSLSQDQ LFSIIDVSPS WAYNGTKTKV  420
LITGTFLAKK EDVENCRWSC MFGDVEVSAE VLVDGTLRCY TPVHHSGRVP FYVTCSNRVA  480
CSEVREFEFR DSETHYMETS DLHPTGINEM HLHIRLDKLL SLGPEDYEKY VLSNGNKAEL  540
IDTINSLMLD DKLSNLALSS DEKELSTVRD QNIEKQVKEK LYYWLIHKIY DDGKGPNVLG  600
KEGQGVIHLV AALGYDWAIK PIVAAGVNVN FRDIRGWTAL HWAASCGRER TVCALIANGA  660
AAGYLTDPTQ QFPSGRTAAD LASENGHKGI AGFLAESALT SHLSALTLKE SQGGKAEEIC  720
GLAAAEDFAE PSSVQPASVD SQAESLKDSL GAVRKSTQAA ARIFQAFRVE SFHRKKVIEY  780
GDDDCGLSDE RTLSLVSLKN AKPGHSDMPV HSAAVRIQNK FRGWKGRKEF MIIRQKIVKI  840
QAHIRGHQVR KSYRKVVWSV GIVEKVILRW RRKGRGLRGF QAEKQLEGPS SQIQPAKSEA  900
EDEYDFLKDG RKQAEGRLQR ALARVHSMTQ YPEARDQYRR LQTCVNELQE PQVLSLFSTI  960
IVAMQDRVLS DSAGADGGDL MAELEELCRG DGDAPMSTIS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800735.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A1E5VCX20.0A0A1E5VCX2_9POAL; Calmodulin-binding transcription activator 1
STRINGPavir.Ba00386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein