PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016141.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GATA

Protein Properties

Length: 333aa MW: 36111.4 Da PI: 9.8657

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016141.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.8	1.3e-17	175	208	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Do016141.1 175 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 208 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.66E-13	166	209	No hit	No description
SMART	SM00401	2.9E-19	169	221	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.268	173	205	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.1E-14	173	208	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.06E-15	174	206	No hit	No description
Pfam	PF00320	2.4E-15	175	208	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	175	200	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSTIYMSQLS TLPLMEGEQD QGLFPAFHVT KDPPILFPFM INNPVDQLQG QSSYGDQHLR 60 QQVLAESTQQ FTDRMMMSGS DVFPRPLPFR PTIQSIDGDM IQRSAYDPYD IESKRADGST 120 SAWAVAPPTK MKIMRKSTSE YPEGGAARKP RRRSQAHQDE SQQLQQQAMG VVRVCSDCNT 180 TKTPLWRSGP CGPKSLCNAC GIRQRKARRA MAAAAAAAAS NGGAPQVASV AAQAKPAKKE 240 KRAYIDRSLP FKKRCKMVAV EHAVPAAKAT PAVAAPTKDQ DHVSSDKVAA TAMSLQSKVA 300 TPPPAMSFHA FPADEITDAA MLLMTLSCGL VRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016141.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795730.1	0.0	putative GATA transcription factor 22
Swissprot	Q6YW48	1e-133	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A1E5VD77	0.0	A0A1E5VD77_9POAL; Uncharacterized protein
STRING	Si019058m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	9e-21	cytokinin-responsive gata factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]