PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do016076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bZIP | ||||||||
Protein Properties | Length: 213aa MW: 22510.4 Da PI: 9.887 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.6 | 8.9e-16 | 142 | 192 | 3 | 53 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +++r +r++kNRe+A rsR+RK+a++ eLe++v+ L++e k+L+ + e+l+ Do016076.1 142 SDRRKKRMIKNRESAARSRARKQAYVRELEREVQLLQEEIKSLRVKYEQLR 192 689*****************************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-10 | 140 | 207 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.461 | 142 | 192 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-13 | 143 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.5E-13 | 144 | 193 | No hit | No description |
CDD | cd14707 | 7.63E-19 | 144 | 191 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-12 | 144 | 192 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 147 | 162 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDMEDDEDIW ANTASSPSAS PPRPLAAAAA VSPCGAFIST QLSLNSRLHL LSSAAAAGGG 60 TSRPRPAVAG AGAGIYAADA VRHHMGLGGG FRNAAASPAP YFSYNLDDDA GVGAARSMLE 120 DEMYLGPGAA AATWASAGVG GSDRRKKRMI KNRESAARSR ARKQAYVREL EREVQLLQEE 180 IKSLRVKYEQ LRVSAEVPVP VRKTLQRMPS APF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do016076.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC020116 | 4e-60 | LC020116.1 Sasa veitchii var. hirsuta SvFDL2 mRNA for FD-like gene, complete cds, strain: SvFLD2c. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957504.1 | 6e-98 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | A0A1E5VDC7 | 1e-151 | A0A1E5VDC7_9POAL; Uncharacterized protein | ||||
STRING | Si031077m | 2e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 3e-15 | basic region/leucine zipper motif 27 |