PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015947.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 588aa    MW: 63575.2 Da    PI: 5.4642
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015947.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.13.1e-961835872374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaN 99 
                  +lLlecA+av+++d +++q+l++ l+elasp+gd  q+l +yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+h++aN
  Do015947.1 183 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLSSYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFGHVAAN 280
                 589************************************************************99888744.44444444446**************** PP

        GRAS 100 qaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak. 184
                  aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvpf+f+++++  
  Do015947.1 281 GAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVPFSFRAVHHAg 379
                 *****987766667778999************************889***********988889999999************************97767 PP

        GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.............sFlerflealeyysal 267
                 +l++l+l++L+++      ala+n+v +l  ++  ++  +  rd++ + +++l P+vv+vve+ead+ ++              Fl+ f e l+++sa 
  Do015947.1 380 DLAELDLDALDLRDggaTTALAINCVNSLRGVV--PGGARR-RDAFTSSLRRLDPRVVTVVEEEADLVASdldaseeggdteaAFLKVFGEGLRFFSAY 475
                 **************888889************9..555555.99*********************99544489999*********************** PP

        GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslv 359
                 +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++llr++  +g+++ +         + ++
  Do015947.1 476 MDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMRDAclddsatGAGVF 572
                 *********************.********************************************************.88888844444455355566 PP

        GRAS 360 lgWkdrpLvsvSaWr 374
                 l Wk++pLv++SaWr
  Do015947.1 573 LAWKEQPLVWASAWR 587
                 **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.466156561IPR005202Transcription factor GRAS
PfamPF035141.1E-93183587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQQS ASYNSRSTTS SGSRSSSHQT NASYNYYYHS NSSGGGGGQY  60
YYGQQHQHQQ YYLEPYQQEE CGNAHHLYMD EDFSSSSSSR QHFHSHGAAV QPPTSSVATP  120
TAPTPPLSTS STAAGAAHAL FEAADLSFPP DLNLDFSSPT SSSGGGAASS AAVGGGGGGR  180
WASQLLLECA RAVAARDSQR VQQLMWMLNE LASPYGDVEQ KLSSYFLQGL FARLTASGPR  240
TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEA AAASSEPQRF  300
HILDLSNTFC TQWPTLLEAL ATRSADDTPH LSITTVVSAA PSAPTAAVQR VMREIGQRME  360
KFARLMGVPF SFRAVHHAGD LAELDLDALD LRDGGATTAL AINCVNSLRG VVPGGARRRD  420
AFTSSLRRLD PRVVTVVEEE ADLVASDLDA SEEGGDTEAA FLKVFGEGLR FFSAYMDSLE  480
ESFPKTSNER LALERGAGRA IVDLVSCPAS ESMERRETAA SWARRMRSAG FSPVAFSEDV  540
ADDVRSLLRR YREGWSMRDA CLDDSATGAG VFLAWKEQPL VWASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16217758882474Protein SHORT-ROOT
5b3h_B1e-16317858829420Protein SHORT-ROOT
5b3h_E1e-16317858829420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958171.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A1E5VLU00.0A0A1E5VLU0_9POAL; Protein SHORT-ROOT 1
STRINGSi029296m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-142GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]