PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015934.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 355aa MW: 37935.3 Da PI: 8.2792

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015934.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	164.5	5e-51	102	259	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ + +++sec e++sss s++ ++++ Do015934.1 102 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSLSVDGKHNPaelgggdqqa 198 589************************************************************..66667999999999999777778888888899 PP TCP 89 .............kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 ka+k+a+++k+++ksa+++ ++ke+rakar+rarert+ek+r+++++ Do015934.1 199 kgngarsegkkpaKARKAATTPKPPRKSANAHPVPDKETRAKARERARERTKEKHRMRWVK 259 999999**6666666699**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-45	104	255	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.255	105	163	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.593	235	252	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDLPLYQQLQ LSPPSPKPDQ SSSFFYYPCS PPAAADADAS FHLSYQLGSV AAAADTTPPQ 60 AVIDSPELTA QPLMEQAPAP ATELDTCANA HGAGASLDRA AAAARKDRHS KICTAGGMRD 120 RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNTSKAAI QEIMTDDASS ECVEDGSSSL 180 SVDGKHNPAE LGGGDQQAKG NGARSEGKKP AKARKAATTP KPPRKSANAH PVPDKETRAK 240 ARERARERTK EKHRMRWVKL ASAIDVEAAA ASVARDRPSS NNLNHHSSSN MACAAAELER 300 CSSALNNGGR MQEITGASDV ILPFGNGGYG AAGNYYCQEQ WDLGGVVFQQ NSRFY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDLPLYQQLQ LSPPSPKPDQ SSSFFYYPCS PPAAADADAS FHLSYQLGSV AAAADTTPPQ  60
AVIDSPELTA QPLMEQAPAP ATELDTCANA HGAGASLDRA AAAARKDRHS KICTAGGMRD  120
RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNTSKAAI QEIMTDDASS ECVEDGSSSL  180
SVDGKHNPAE LGGGDQQAKG NGARSEGKKP AKARKAATTP KPPRKSANAH PVPDKETRAK  240
ARERARERTK EKHRMRWVKL ASAIDVEAAA ASVARDRPSS NNLNHHSSSN MACAAAELER  300
CSSALNNGGR MQEITGASDV ILPFGNGGYG AAGNYYCQEQ WDLGGVVFQQ NSRFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269\|PubMed:12524360, ECO:0000269\|PubMed:16642024, ECO:0000269\|PubMed:17947410, ECO:0000269\|PubMed:8536981, ECO:0000269\|PubMed:9087405}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015934.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243260	0.0	AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796975.1	0.0	transcription factor TEOSINTE BRANCHED 1-like
Swissprot	Q93WI2	1e-173	TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBL	A0A1E5VDH9	0.0	A0A1E5VDH9_9POAL; Transcription factor TEOSINTE BRANCHED 1
STRING	Pavir.Ia00838.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-20	TCP domain protein 12

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895] Clark RM,Tavaré S,Doebley J Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus. Mol. Biol. Evol., 2005. 22(11): p. 2304-12 [PMID:16079248]