PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 71aa MW: 7582.99 Da PI: 8.5134 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.9 | 1.9e-10 | 23 | 61 | 1 | 40 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy 40 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i++++++ Do015875.1 23 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDANLT 61 799**********************99999.889988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-14 | 14 | 63 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.465 | 23 | 71 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-6 | 24 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MEGQPGGAWR MLQGLTGAPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGIIPDANL 60 TCLPSLKTPC A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015875.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 2e-50 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817662.1 | 7e-30 | NAC domain-containing protein 83-like isoform X1 | ||||
Refseq | XP_025817663.1 | 7e-30 | NAC domain-containing protein 10-like isoform X2 | ||||
TrEMBL | A0A1E5VG06 | 1e-43 | A0A1E5VG06_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 9e-29 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-13 | NAC domain containing protein 47 |