PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015720.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 582aa    MW: 64867.9 Da    PI: 5.6188
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015720.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.1e-1941371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk 95 
                 lppG+ FhP d+el  ++L ++++g++  l+   vi++ +  ++ Pw+L k +  a+++e yf ++++  +     r+ r    g Wk   +  +++++
  Do015720.1   4 LPPGVNFHPDDDELAEFFLLPSARGEPawLPGVVVIEDDNAPNTVPWKLLKhHGLADDDEAYFLVRSNDGKLeACARQVRYC-GGGWKWVSQRPSLHCA 101
                 79*************************77666567**************741334467799999887665541567888865.5889988888888877 PP

         NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++e ++ k+ L +  gr +++ +t Wvmhey+l
  Do015720.1 102 cigGEEIKWRKHNLNLQMGRGKSTGSTGWVMHEYAL 137
                 887778899999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-252151IPR003441NAC domain
PROSITE profilePS5100523.5394153IPR003441NAC domain
PfamPF023655.0E-115137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MLGLPPGVNF HPDDDELAEF FLLPSARGEP AWLPGVVVIE DDNAPNTVPW KLLKHHGLAD  60
DDEAYFLVRS NDGKLEACAR QVRYCGGGWK WVSQRPSLHC ACIGGEEIKW RKHNLNLQMG  120
RGKSTGSTGW VMHEYALTQP PCPFLKICHV VFSGHGQKRK RIPDDDSQYC QAGEPASHRA  180
RIDASATAAA NNGGSATSGY GSRSKMTMFD QDYSVGVHAS AHQQEPSPPF LNDAVGIWAM  240
ADQAQQPEGN DLPALAPYTE CEEQVLAAYH QDSQLLTDQG YFRHDPLTNS NGLLGFPSQT  300
SGGFENFYGA PAMGDKDDAV THLRSSAELN QEFEEQVPTT IGQQLPAVQE IDTAEQQFWD  360
SIGVDISGNW YPTTPLKPMD SEAGSMPEGS DSALSNTPPV LAPPFPYSPY PPYPYWPYPS  420
YPQPFDVNQS WIAPKSKGKG KAPKGVSRRG QSYINAEDIA LCSAYLNVSK DPIASVNQSL  480
DAYWDPIMHY FHEHGHGKWH RSSDSLQNCW KTIQTQTLLF SSYKARIDRK NESGKTEDDW  540
FQDAITHYEA VQNKKWIYAH CWNILKHQEK WKDGNHRKPD EG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ia01183.1.p3e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.14e-11NAC domain containing protein 86