PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do015562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRF | ||||||||
Protein Properties | Length: 370aa MW: 39875.7 Da PI: 8.2353 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.4 | 2.2e-22 | 128 | 172 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+ Do015562.1 128 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRNCHRSRKHVES 172 79****************************************996 PP | |||||||
2 | QLQ | 57.2 | 5.2e-20 | 68 | 104 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Do015562.1 68 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIRR 104 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.4E-12 | 68 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.3E-14 | 69 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.464 | 69 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.468 | 128 | 172 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-17 | 129 | 171 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MEAGRDGFLG AAGRTSPPPP PSCSFLGSAA TTGSGGAQML SFSSSGAAGL GLSSGASKMQ 60 GVLSRVRGPF TPTQWMELEH QALIYKHFAV NAPVPSSLLL PIRRSINPWS GLGSSSLGWT 120 PFRPGSCDAE PGRCRRTDGK KWRCSRDAVG DQKYCERHIK RNCHRSRKHV ESRKATPTIA 180 EPAVAVSGGP SLHSYTVPWQ QQVKSSAANV TIPFSRESNR KLLEKQNIHN QLSVSAPMDS 240 FDFASSVSSQ NRDIVALSPV ELRHDHDQAY IVHGVGSSAE NGNELQENLL LVSRETLDDG 300 PLGEVFKSKS CQSAYADILT DQWTATCELH SPTGILELSS SNTMPVENHM SSHGYLMATM 360 VNSQTVPTFP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do015562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827128.1 | 0.0 | growth-regulating factor 8-like isoform X1 | ||||
Swissprot | Q6AWY1 | 1e-148 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A1E5VK82 | 0.0 | A0A1E5VK82_9POAL; Growth-regulating factor 8 | ||||
STRING | Pavir.Hb00712.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 8e-42 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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