PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015389.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 446aa    MW: 47483.6 Da    PI: 9.5835
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015389.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.14.4e-19316385163
                 XXXXCHHHCHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRK.......kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkrerrkq+NRe+ArrsR+RK       ++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Do015389.1 316 ERELKRERRKQSNRESARRSRLRKqlpclifQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 385
                 89*********************944444445**********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-15314382No hitNo description
SMARTSM003386.5E-18316387IPR004827Basic-leucine zipper domain
PfamPF001707.9E-17316385IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473318381IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.99E-9319376No hitNo description
CDDcd147023.27E-19321379No hitNo description
PROSITE patternPS000360323338IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MASSSDEHPK PPEPPAAAGA VVATAAPPQS HAEWAASLQA YYAAAGHPYA WPAQHLMAAA  60
AAGAPFGTPV PFPVYHPGAA AAYYAHASMA AGVPYPTAEA VAAAAATTAA EGKGKGKSRG  120
ASPEKGSSGA PSGEDASRRY IGFHCCLVSP VLIFLGSPFL FLARFNLNFV ACAVVTAAAR  180
SRLGRETMTL TIRIPLRTRR ENLVTHRLKV GFVFSLFRWK IEWVDEDWCL PGEPSQAALV  240
RYAAVESPYS AAKGRSASKL PVSAPGRAAL PNATPNLNIG MDLWSASPAL AVPAVQGEAS  300
PGLALARRDS VTRLDERELK RERRKQSNRE SARRSRLRKQ LPCLIFQQEC EELARKVADL  360
TTENSALRAE LDNLKKACQD MEAENSRLVG GMARSQGPSV TTTLGMSIDP PKAQHHDDEG  420
QHHKNTSNNS NGNYAGGSHK PEANTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338RRSRLRK
2332339RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702431e-139EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804569.11e-132DNA-binding protein EMBP-1-like
TrEMBLA0A1E5W4H30.0A0A1E5W4H3_9POAL; DNA-binding protein EMBP-1
STRINGPavir.Ba03287.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.18e-19basic region/leucine zipper transcription factor 16