PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015340.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 321aa    MW: 35221.7 Da    PI: 4.9958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015340.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32.1e-55181451129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee+v++yL++k+ ++++++  v+++vd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ +g l
  Do015340.1  18 LPPGFRFHPTDEEVVSHYLTNKALNSRFSC-VVVADVDLNKIEPWDLPGMAKMGEKEWYFFCQKDRKYPTGTRTNRATASGYWKATGKDKEIFRGRGVL 115
                 79**************************99.78***************888899********************************************* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+grap+g kt Wvmheyrle
  Do015340.1 116 VGMKKTLVFYTGRAPRGGKTPWVMHEYRLE 145
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6316168IPR003441NAC domain
PROSITE profilePS5100558.82818168IPR003441NAC domain
PfamPF023653.5E-2919144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSEVSVMNPG EEETPLELPP GFRFHPTDEE VVSHYLTNKA LNSRFSCVVV ADVDLNKIEP  60
WDLPGMAKMG EKEWYFFCQK DRKYPTGTRT NRATASGYWK ATGKDKEIFR GRGVLVGMKK  120
TLVFYTGRAP RGGKTPWVMH EYRLEGKLPP NLPRAAKDEW AVCRVFNKDL AAKAGQMAPA  180
AGMEPTNSVD FVDDIFGAEL PPLMDSPYAV DDLLDFKGPA GGSSSGGAAG MGSGGYQVKA  240
EQQSQQPPQD ANYFSLPAAS GYPHQGAEQA IRAHCKAEEG PALLGPSRGE TALGDMSSRP  300
YSELDDLLLD DFMDYSNMWK F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-541316810168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170091e-163KM017009.1 Miscanthus lutarioriparius NAC11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804669.11e-166NAC domain-containing protein 87-like
SwissprotQ9SQQ66e-89NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A1E5VF370.0A0A1E5VF37_9POAL; NAC domain-containing protein 100
STRINGSi030526m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-83NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]