PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015314.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 330aa MW: 35842.5 Da PI: 8.0312

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015314.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.1	1.9e-12	22	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkike.gekkrtsessstcpyfd 83 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + + + ++++f Do015314.1 22 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaadaaaagkapGGGNSAKTPNQCKNKIESMKKRYRAESAaVLRAGPAAAGPSWRFFA 120 5********************************9999999****9877777899*************98761566667888889**9 PP trihelix 84 qle 86 +++ Do015314.1 121 RMD 123 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-14	20	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDGLPDADAA PLAAAPPQKR DEWSESGIVR LLEAYEAKWL LRNRAKLKWS DWVDIAREVS 60 AHCAADAAAA GKAPGGGNSA KTPNQCKNKI ESMKKRYRAE SAAVLRAGPA AAGPSWRFFA 120 RMDGLLKGPA VCSGQAQQAE LGNSIDLRAP AKPEAEVEAD FTAQLPDAGP GAFSDLMNID 180 TNGAIPEKAE KVDNSVQKES RAADSDANLS SPRSKVANED VEEVDKVWDR PKKRKSTEFD 240 IAKSIELLAN SYLKIEQARM EMYRETERMR VEAEIKKGEM ELKRTEIMAK THLQIAKLFA 300 KRLKEGSGKT GGSSSVTAEV DTLTKKGENG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015314.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	1e-102	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	1e-102	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	1e-102	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	1e-102	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	1e-102	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008653024.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A1E5VLA6	0.0	A0A1E5VLA6_9POAL; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-38	sequence-specific DNA binding transcription factors