PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015233.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 199aa    MW: 21050.1 Da    PI: 10.6448
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015233.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.55.2e-12102162262
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  Do015233.1 102 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 162
                 78899***************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-13101165IPR004827Basic-leucine zipper domain
PfamPF001702.5E-10102163IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.162103166IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-11106163No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-16106165No hitNo description
CDDcd147047.71E-16106156No hitNo description
PROSITE patternPS000360108123IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAAQEQEQEK QQAKSTTSSL PSSSERSSSS APNNLREGGV ESDEEIRRVP EMGGASASAS  60
SGAGADELPR EDGKQGQLVA MTGAQGQPPA AGKKRGRTAG DKEQNRLKRL LRNRVSAQQA  120
RERKKAYLTE LEAKAKDLEL RNAELEQRVS TLQNENNTLR QILKNTTAHA SKRSSGSGGA  180
GGKGGDGGGG GKKHHFTKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188GGKGGDGGG
2182191KGGDGGGGGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350880.0BT035088.1 Zea mays full-length cDNA clone ZM_BFb0038J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815107.12e-86transcription factor HY5-like
RefseqXP_025815108.12e-86transcription factor HY5-like
SwissprotQ9SM501e-43HY5_SOLLC; Transcription factor HY5
TrEMBLA0A1E5VJ781e-137A0A1E5VJ78_9POAL; Transcription factor HY5
STRINGPavir.Eb00436.1.p8e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-37bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]