PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015158.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 295aa    MW: 31000.6 Da    PI: 5.6947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015158.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27103162258
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 dDg++WrKYGqKe+ g+++prsYYrCt++   gC ++k+v+r++ed ++++++Y g H++
  Do015158.1 103 DDGHSWRKYGQKEILGAKNPRSYYRCTHRhslGCAATKQVQRTDEDATLFDVVYIGAHTC 162
                 8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-26100162IPR003657WRKY domain
SuperFamilySSF1182906.15E-24101162IPR003657WRKY domain
SMARTSM007743.5E-39102164IPR003657WRKY domain
PfamPF031061.2E-26103162IPR003657WRKY domain
PROSITE profilePS5081120.725103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MESIVVDGGN GGSSGLVVTE LSHIKELVRQ LEGHLGGSAQ TQEQCKHLVS QISSLTEHSI  60
TLITSCSLVG GQKRCQVVCR KTAEKIKHQV KVSSAGGGDI PADDGHSWRK YGQKEILGAK  120
NPRSYYRCTH RHSLGCAATK QVQRTDEDAT LFDVVYIGAH TCIQTGVAAA AGQAASAAQT  180
PEHNPNAHCL LQSLSSNLTV KTEGLAVAPE PLQGWIATTP FCLSSTPASG CLASTSENWG  240
VSPATSDSNH AASFPPFEAA AGDDAPLDFV GEVVSVLVDD IPNEFLDFDI ASFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20103162968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586252e-59KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956612.11e-117probable WRKY transcription factor 30
TrEMBLA0A3L6TEL51e-118A0A3L6TEL5_PANMI; Putative WRKY transcription factor 30
STRINGSi030531m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-34WRKY family protein