PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015157.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 338aa    MW: 35907.9 Da    PI: 6.0804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015157.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.3e-27129189158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+r++edp++++++Y+geH++
  Do015157.1 129 VDDGHSWRKYGQKEILGAKNPRGYYRCTHRhsqGCQATKQVQRTDEDPTLFDVIYHGEHTC 189
                 59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.756124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-28126190IPR003657WRKY domain
SuperFamilySSF1182908.24E-25127189IPR003657WRKY domain
SMARTSM007749.3E-40129191IPR003657WRKY domain
PfamPF031061.4E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMARSMESVD GNGASGGLVV TELSHIKELV RQLELHLGGS HDLCKHLTTQ IFSLTERSIS  60
IITSSSGLDG ARKRAAADTG LASPLSAATP TSDVTDGPFK NTKKRKVMEK RKHQVRVSSA  120
GGGAGENPVD DGHSWRKYGQ KEILGAKNPR GYYRCTHRHS QGCQATKQVQ RTDEDPTLFD  180
VIYHGEHTCV QRPMGAATAA AGQPEHNPDA NSLLQSLTAG LTVKTEGLPA LAADPQGGWS  240
ATAPFYFSSS TPMSGCLATT ERSPFSAPST SENWGVSPAT SDSNHVASYL PFEDAEWRGQ  300
NELQEVVSAL VAASAAPAPA VDNLDELLDM DDIASFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22129189868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586250.0KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.10.0probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ70.0A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-36WRKY family protein