PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014704.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 345aa    MW: 35416.8 Da    PI: 5.6633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014704.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.71.3e-24130191159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg +WrKYGqK +++s +prsYYrCt++   gC+++++v+ s+ +p+ ++i Y g+H+++
  Do014704.1 130 LDDGNSWRKYGQKCIQDSSNPRSYYRCTHRpdqGCRATRQVQASDANPSEFVISYFGQHTCR 191
                 58***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-25119193IPR003657WRKY domain
SuperFamilySSF1182903.4E-24124193IPR003657WRKY domain
PROSITE profilePS5081121.448125193IPR003657WRKY domain
SMARTSM007747.7E-33130192IPR003657WRKY domain
PfamPF031061.5E-22131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASSAGGADG GGRSPPPAAA PRAVVDNLID VRERAEMLRN MLQGSPTPPG TPADAAPGTS  60
ELIDGIMSSL SSAMSALDTP SGDGGGGQGQ GRRRRRRNAG PAAGSGPQRR SSTRRRSHSP  120
FLETITASTL DDGNSWRKYG QKCIQDSSNP RSYYRCTHRP DQGCRATRQV QASDANPSEF  180
VISYFGQHTC RDPSTIPLVI EDTAPQDCAN LISFGSTMGG ASTSTDTTTT VPLHAFDPTI  240
ISRFFGGYSS SLPAQEYRCG SEEVHSSSSP PAAALAAVVG SAGMTSSATV GSAPAEYWPG  300
GAAGDMACGP GTGSFPSSPS SLGFMPGSFG SFGNAGDDDL FGFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-24124191269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.11e-157probable WRKY transcription factor 38
TrEMBLA0A1E5VF740.0A0A1E5VF74_9POAL; Uncharacterized protein
STRINGSi030395m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-23WRKY DNA-binding protein 46