PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014473.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 282aa MW: 30340.9 Da PI: 5.0715

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014473.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.1	3.3e-17	118	171	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rr+ +NRe+ArrsR+RK+a++ Le v++L++eN +L k+l+e +++ Do014473.1 118 ETKRIRRMVSNRESARRSRRRKQAQLTDLESQVEQLKGENATLFKQLSEANQQF 171 679*****************************************9888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-17	116	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.461	118	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-15	118	170	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-12	120	172	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-14	120	171	No hit	No description
PROSITE pattern	PS00036	0	123	138	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MKKCPSELQL EAFIRENGEG AGAGQSKPES GPSEPGGSGV FSPGGIGFGD TNTMDGSSWW 60 FGSMLPANPV LLQTASISAS PRATTSANHA LESESDSDSE SLYEVDEGSC ERGTKSMETK 120 RIRRMVSNRE SARRSRRRKQ AQLTDLESQV EQLKGENATL FKQLSEANQQ FTTAVTDNRI 180 LKSDVEALRV KVKMAEDMVA RSAMSCGLGD LGLAPYLNSR KMCQALNMLT VTGLDLLGSD 240 AFRGPTAARQ IQNSPVQSTA SLESLDNRKS SEVTSCAADM WP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	139	RRSRRRKQ
2	134	139	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014473.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-173	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-103	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A1E5VB90	0.0	A0A1E5VB90_9POAL; Uncharacterized protein
STRING	Si007043m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-29	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]