PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014462.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 544aa    MW: 57907.4 Da    PI: 6.5584
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014462.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.67.2e-1021705431374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely....kalppsetseknsseelaalklfsevsPilkfsh 95 
                 lv+lL++c eav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +        a+   ++   +   +  al l +e++P+l+f+h
  Do014462.1 170 LVQLLVACXEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALgpasMAFCIPPSCAGRNGARSEALALAYELCPYLRFAH 268
                 689**************************************************98655443110022222333333367777888899*********** PP

        GRAS  96 ltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 ++aN  Ilea+ege+ vH++D++++     G QW  Ll+ La+R++ +p ++ iTgvg+     +++++++g+ L+ +Ae lg+ +ef++ v ++le+l
  Do014462.1 269 FVANASILEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARAGAKPkRVCITGVGA----PTDTMRTVGRELEVYAEGLGMYLEFRA-VDRSLESL 362
                 *********************98762222567*************66665*********....88*************************.799***** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 ++++L +  +Ea+a+n++l+lh +++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy+a+fd+l+a lpr +  r+ vE++
  Do014462.1 363 HIDDLGIGADEAVAINSILELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYYAAVFDALDAALPRYDARRARVEQF 458
                 *************************88877777...8************************************************************** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +g ei+nvv cega+r+erhe++ +Wr+r+++aG++++p++   a++a+  l++ + + gy+v ee+g+lvlgWk++p++++S+W+
  Do014462.1 459 HFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGLQSMPIRM--AAKAREWLEENAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 543
                 *****************************************75..4567888888877999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.97144524IPR005202Transcription factor GRAS
PfamPF035142.5E-99170543IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGMSGQPCRS TPNSFTTSYG SSPQIHHLPQ HDAVLCTEPG LGFPYYYGTD HQDAAFDGDE  60
VELGFRASKA TKVDYYSSPY QPSWPLARSE VAAAAAESSR VRKQRFRDVL ESCKQKVEAM  120
EAMESPVAFQ EGEDGGVVGD GGGAAGGGGG IGGGGGGGGG GGGGADGMRL VQLLVACXEA  180
VACRDRAQAA ALLRELQVGA PVHGTAFQRV ASCFVQGLAD RLALAHPPAL GPASMAFCIP  240
PSCAGRNGAR SEALALAYEL CPYLRFAHFV ANASILEAFE GESNVHVVDL GMTLGLDRGH  300
QWRGLLDGLA ARAGAKPKRV CITGVGAPTD TMRTVGRELE VYAEGLGMYL EFRAVDRSLE  360
SLHIDDLGIG ADEAVAINSI LELHCVVKES RGALNSVLQT IRKLSPKAFV LVEQDAGHNG  420
PFFLGRFMEA LHYYAAVFDA LDAALPRYDA RRARVEQFHF GAEIRNVVGC EGAARVERHE  480
RADQWRRRMS RAGLQSMPIR MAAKAREWLE ENAGGGGYTV AEEKGCLVLG WKGKPVIAAS  540
CWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5217754226378Protein SCARECROW
5b3h_A3e-5217754225377Protein SCARECROW
5b3h_D3e-5217754225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.10.0DELLA protein RGL1-like
TrEMBLA0A1E5VJV70.0A0A1E5VJV7_9POAL; DELLA protein GAI1
STRINGSi000959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-63RGA-like 2