PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do014387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 25563 Da PI: 4.5904 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.6 | 7.7e-21 | 28 | 93 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gC++k+ v+r+++ ++ +++Y geH+++ Do014387.1 28 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCHAKRTVQRNDDAGDggaatpEYTVVYMGEHTCT 93 9*************************988889*********99644322221146899*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-23 | 12 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-20 | 22 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-26 | 26 | 94 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-23 | 28 | 92 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.305 | 28 | 69 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRWPPLCRRT KQEKSSTSSL VTSVPDFDGY QWRKYGQKQI EGAMYARSYY RCTRSAEQGC 60 HAKRTVQRND DAGDGGAATP EYTVVYMGEH TCTANDSLEA PVILETTAVV PADTSTNKRP 120 QEHHDDRTNS IAPTSSGSCS GTTTATGIAS PAISEDITWS SSSSSDYVDD YDYGSFAVHD 180 SWPAPPAAAP ATLQEMEDYF TGPIRSPVHV AAADGWTIDQ LLLQLVNEPI FCNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-13 | 18 | 92 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do014387.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058620 | 1e-94 | KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977390.1 | 4e-88 | probable WRKY transcription factor 58 | ||||
TrEMBL | A0A1E5W2C8 | 1e-174 | A0A1E5W2C8_9POAL; Uncharacterized protein | ||||
STRING | Si010813m | 1e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 1e-16 | WRKY DNA-binding protein 54 |