PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014386.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 260aa    MW: 29440.5 Da    PI: 6.3439
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014386.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.9e-20111175359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.....SSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.....edpkvveitYegeHnhe 59 
                 Dg +WrKYGqK+++++++prsYYrCt++   +C+++k v++++     +dp + +++Y+g+H+++
  Do014386.1 111 DGRQWRKYGQKHINKAKHPRSYYRCTYRqeqDCKATKTVQQQDdstgtDDPVMYTVVYHGQHTCK 175
                 999************************98899********986233336899***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-22103175IPR003657WRKY domain
SuperFamilySSF1182904.32E-21104175IPR003657WRKY domain
SMARTSM007743.4E-29109176IPR003657WRKY domain
PfamPF031062.0E-23111175IPR003657WRKY domain
PROSITE profilePS5081114.573111172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKEIARGQSL VTQLRAIVLP ALQADQRCEL VTQMFQNILD CSSKAITELQ LHHQSDARAS  60
DAMVDDRKRV RRISSDACIK EEGTTANPHQ QHKRRRLDDL VSLETPVPHY DGRQWRKYGQ  120
KHINKAKHPR SYYRCTYRQE QDCKATKTVQ QQDDSTGTDD PVMYTVVYHG QHTCKDNNGV  180
DSGSDESETN TPSSSDSQSS ISTTSTDPYG HQTSQDDNKA LDKSADLITK NIMYEPFNMT  240
AFAPLDLDSW ELDALLRFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-161111751069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.11e-166probable WRKY transcription factor 63
TrEMBLA0A1E5W2510.0A0A1E5W251_9POAL; Uncharacterized protein
STRINGSi010764m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY DNA-binding protein 70