PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014342.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 315aa    MW: 34556.5 Da    PI: 5.4652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014342.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY825.9e-26149207259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers   p v+++tY  eH h 
  Do014342.1 149 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCHA 207
                 699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.311143209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-26144209IPR003657WRKY domain
SuperFamilySSF1182903.92E-23146209IPR003657WRKY domain
SMARTSM007749.0E-31148208IPR003657WRKY domain
PfamPF031063.4E-21150206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEYSNDWDLQ AVVRSCSGSN SEAAPAEPRL EEAPREIRVG RAAAVPELLG QPVRRPAAAL  60
RDLDYLDLDH ELPRAPFSIT PSSERGPLDH EVLFSFPAAS TSGQQQLLQP RKQPGRKPGV  120
RTPRPKRSKK SQLKKVVCEV PVADGGVSTD LWAWRKYGQK PIKGSPYPRG YYKCSSLKAC  180
MARKLVERSP AKPGVLVVTY IAEHCHAVPT MLNALAGTTR HRPASPDDDH QASQQSHGAS  240
DEAASAKREE YSADASSMTV DGGGSAETTA DGENEPWQVD MALDDYPLDD FLGPFDDDFD  300
RFFEDDGVLE RRVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-18131210380Disease resistance protein RRS1
5w3x_D9e-18131210380Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114169e-99AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706019e-99AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961083.11e-173WRKY transcription factor 22
TrEMBLA0A1E5VWF50.0A0A1E5VWF5_9POAL; WRKY transcription factor 22
STRINGSi022676m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-36WRKY family protein