PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014309.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 399aa    MW: 41023.7 Da    PI: 6.9997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014309.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33204261259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Do014309.1 204 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 261
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-35188263IPR003657WRKY domain
SuperFamilySSF1182901.15E-29195263IPR003657WRKY domain
PROSITE profilePS5081132.535198263IPR003657WRKY domain
SMARTSM007742.6E-39203262IPR003657WRKY domain
PfamPF031062.1E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSSGDFFHDE LASLFAQRPA PGEMMAQQQQ APASWFADYL HAAGGGAPGV EGMDHYDLLC  60
RALDLPVPGD DNVIKRELLV VDTGGGGGGG FGGAPTPTPS GGGTAPVTPN TTSSMSSSSS  120
EAAGGGGGGG GGGGSFGAGE EDSLKKEEGE EGEESKELGS KGEDDADKIK KGAAAAGKAK  180
GKGEKRQRQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCPVKKRV  240
ERSYQDPAVV ITTYEGKHTH PIPATLRGST HLLAAQLHHH AGGHHLGGAF PPPPLPQMGA  300
AFGRAGGVGG GVIDVLGLLP PRGGAHNHTV PPAIGLASSH GMSGPMSTVA GATTTAATIT  360
TSSSPPSLQM QHFMAQDFGL LQDMLPPFVH STGGGNIQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27194264878Probable WRKY transcription factor 4
2lex_A1e-27194264878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.11e-168probable WRKY transcription factor 48
TrEMBLA0A1E5VIP10.0A0A1E5VIP1_9POAL; Putative WRKY transcription factor 71
STRINGSi001816m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-49WRKY DNA-binding protein 71