PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014158.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 447aa    MW: 46908.2 Da    PI: 8.7015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014158.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017206229123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C+ Cg++  r+ +L+ H+ + H
  Do014158.1 206 FPCKVCGEVLGRPQLLELHQAMkH 229
                 89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280208229IPR007087Zinc finger, C2H2
SuperFamilySSF563992.21E-11231446No hitNo description
Gene3DG3DSA:3.90.228.108.2E-9232446IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAGSGSGSGS GSSLLRGFLS LFFLLFIHIG HAGCCFSPGP SARPREEDEA ADAGVDGKVG  60
GGGGSNKRRK ISPLIFSPAA SSSAVTNDSV GARRSRHVSS VAASLRFYLH RIFSSSAGAK  120
DGAVAGREEE EAVTTNVSSP LAQSLQPQPS VSVVLSSPSS PCASSPFMSP LSVRSLSATP  180
VPSSPQRLLQ GSRQSSRSFA ARGDVFPCKV CGEVLGRPQL LELHQAMKHS LSELTHLDSS  240
MNIIRMIFLA GWKPAAASGA GEAPAARRIL RIHHNPRALA RFEEYRDLVR ARAARRCGEA  300
GAAEEERCVA DGNERLRFHC STMLCSLGGG GVCGSPYCCV CSTLRHGFAG KQADVDGIAT  360
YASAWAAHAS LPEDVEREFA FLQVRRAMLV CRVVVGRVGR GAADDKVAYD SMAPARAGAS  420
VSGGDDVELL VFNPRAVLPC FVILYSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313429.10.0uncharacterized protein LOC8054291
TrEMBLA0A1E5UPY00.0A0A1E5UPY0_9POAL; Uncharacterized protein
STRINGSb01g040170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.17e-34C2H2 family protein