PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013815.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 127aa MW: 14437.3 Da PI: 10.954

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013815.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.8	9.2e-32	17	93	55	129
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v ++ +g l+g++ktLvfy+grap+g+ktdW+mheyrle Do013815.1 17 KSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGRDKAVRDSkhGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 93 469**********************************98777888**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.144	1	116	IPR003441	NAC domain
Pfam	PF02365	3.8E-16	6	92	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-33	18	98	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MSSATLISTA LSHGIFKSDW YFFSYKDRKY PTGTRTNRAT LTGFWKATGR DKAVRDSKHG 60 GGLIGMRKTL VFYTGRAPNG RKTDWIMHEY RLETDENAAP QARPSRHMSL TSHSKHRCVH 120 VHALHSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-25	17	92	70	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-25	17	92	70	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-25	17	92	70	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-25	17	92	70	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-25	17	92	73	145	NAC domain-containing protein 19
3swm_B	2e-25	17	92	73	145	NAC domain-containing protein 19
3swm_C	2e-25	17	92	73	145	NAC domain-containing protein 19
3swm_D	2e-25	17	92	73	145	NAC domain-containing protein 19
3swp_A	2e-25	17	92	73	145	NAC domain-containing protein 19
3swp_B	2e-25	17	92	73	145	NAC domain-containing protein 19
3swp_C	2e-25	17	92	73	145	NAC domain-containing protein 19
3swp_D	2e-25	17	92	73	145	NAC domain-containing protein 19
3ulx_A	2e-25	19	92	70	140	Stress-induced transcription factor NAC1
4dul_A	1e-25	17	92	70	142	NAC domain-containing protein 19
4dul_B	1e-25	17	92	70	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013815.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075086	1e-116	KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661306.1	2e-55	NAC domain-containing protein 105
Refseq	XP_022678690.1	2e-55	NAC domain-containing protein 105
Refseq	XP_022678691.1	2e-55	NAC domain-containing protein 105
Refseq	XP_025796895.1	2e-55	NAC domain-containing protein 105-like
Swissprot	O65508	3e-43	NAC76_ARATH; NAC domain-containing protein 76
TrEMBL	A0A1E5VIF5	1e-89	A0A1E5VIF5_9POAL; NAC domain-containing protein 76
STRING	Pavir.Ia02924.1.p	9e-56	(Panicum virgatum)
STRING	Si039467m	5e-56	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	1e-45	NAC domain containing protein 76

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]