PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do013739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 113aa MW: 12513.9 Da PI: 4.2147 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.8 | 3.4e-13 | 12 | 100 | 2 | 90 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppG+ FhP d+elv ++L ++v g++ ++ vi++ ++ Pw+L k++ +++e yf ++++ ++ + r+ r g W + + Do013739.1 12 PPGVNFHPDDDELVEFFLLPSVCGEPawFPGVVVIEDDSAANTLPWRLLKRHGLgDDDEAYFLVHTNDAE-EVARQDRYCV-GGWTRVSQ-R 100 8*************************776665679999**********8554442556888888887765.5789999765.77986654.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-15 | 4 | 93 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.185 | 11 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-7 | 12 | 98 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MSTRAAEILG HPPGVNFHPD DDELVEFFLL PSVCGEPAWF PGVVVIEDDS AANTLPWRLL 60 KRHGLGDDDE AYFLVHTNDA EEVARQDRYC VGGWTRVSQR SVSDDSCIGG EKI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do013739.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954806.1 | 1e-32 | NAC domain-containing protein 48 | ||||
TrEMBL | A0A1E5VKK1 | 3e-78 | A0A1E5VKK1_9POAL; Uncharacterized protein | ||||
STRING | Si019235m | 4e-53 | (Setaria italica) | ||||
STRING | Si019271m | 5e-53 | (Setaria italica) | ||||
STRING | Si019812m | 4e-53 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8717 | 9 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 3e-08 | NAC-domain protein 101 |