PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013637.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 269aa    MW: 28207 Da    PI: 7.2514
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013637.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67e-343994458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                   Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr+ve
   Do013637.1 39 QLYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRTVE 94
                 57***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-284093IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-234191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1724192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-314192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.52E-8213268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-18215268IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEAMDVKYKP LMFPNGAAVK KVKPAAVAPA AAAAAVGEQL YRECLKNHAA SLGGHAVDGC  60
GEFMPSPGAN PADPTSLKCA ACGCHRNFHR RTVEGGSPPP PAPLALPPPP ALPSVLHGQP  120
HRGGEETPED RLPGVADDSD SDSDASEYDE ERSVSPPPPA HHVPAPVAQQ LPPPPYFTPA  180
PPHMLLSLGS GAPGAAVAAA AQRLAPAQLT PSSAPPPGGA MPRKRFRTKF TAEQKQRMQE  240
LSERLGWRLQ KRDEAIVDEW CRDIGVGKG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1652670.0AC165267.2 Zea mays clone ZMMBBb-151F20, complete sequence.
GenBankEU9678920.0EU967892.1 Zea mays clone 306859 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698877.11e-120zinc-finger homeodomain protein 9
SwissprotQ6ER214e-85ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A1E5VP750.0A0A1E5VP75_9POAL; Zinc-finger homeodomain protein 9 (Fragment)
STRINGGRMZM2G161315_P011e-118(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-26zinc finger homeodomain 1