PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do013407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39500.3 Da PI: 6.8673 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.4e-51 | 37 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 pGfrFhPtdeel+++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ Do013407.1 37 LPGFRFHPTDEELITFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAatgr 134 69***************************.89***************556667899**************************************98777 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +glkk+Lvfy+g+a kg+kt+W+mhe+rl Do013407.1 135 AGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 167 7777***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.264 | 36 | 196 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-55 | 36 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-25 | 38 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MVAKELAREV TISMDKVKSD GEALIAVGDE EEDDVVLPGF RFHPTDEELI TFYLRRKVAR 60 KPLSIEIIKE MDIYKHDPWD LPKASTAGGE KEWYFFCLRG RKYRNSIRPN RVTGSGFWKA 120 TGIDRPIYSA ATGRAGDSIG LKKSLVFYRG SAGKGTKTEW MMHEFRLPPA TAAAATNASP 180 SMQEAEVWTI CRIFKRNITY KRQQPQQVWR QPMATSNALP PADSSSNTGS FESDGGDEYM 240 NCQPAAAPSV PRQQHHFSNQ VNMLNGGGSG SGSFFRESLH SQQFQGQWFN SLPAQEIEQK 300 PQLNSSAMTI SFHQNDQSLA VNDCCKDGYW DEIARFMEVN DPTAFYDCRY A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 38 | 196 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 38 | 196 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 38 | 196 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 38 | 196 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-48 | 38 | 196 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 38 | 196 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do013407.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT055579 | 1e-164 | BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds. | |||
GenBank | HQ858689 | 1e-164 | HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795725.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1E5ULR5 | 0.0 | A0A1E5ULR5_9POAL; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | Si036447m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-84 | NAC domain containing protein 42 |