PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013296.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 995aa    MW: 108437 Da    PI: 8.2398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013296.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.42.9e-081191671959
                 SS-EEEEEE-ST...T---EEEEEE-S.....SSTTEEEEEEES--SS- CS
        WRKY  19 efprsYYrCtsa...gCpvkkkversa.....edpkvveitYegeHnhe 59 
                 +  rsYYrCt++   +C+++k v++++     ++p + +++Y+g+H+++
  Do013296.1 119 HKRRSYYRCTYRqeqNCKATKTVQQQDdstvtDNPVMYTVVYHGQHTCK 167
                 567********99999********986222224678899********96 PP
2WRKY67.91.5e-21742803259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                 +Dgy+WrKYG K+++g+ ++rsY+rCt++   gC ++k+++++ ++dp v+++tY+++H+++
  Do013296.1 742 EDGYEWRKYGEKKINGTSYTRSYFRCTYKdetGCLATKHIQQKdSSDPPVFQVTYNNKHTCH 803
                 7***************************99999*******875268**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.3E-7111168IPR003657WRKY domain
PfamPF031063.0E-11118167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-9118167IPR003657WRKY domain
SuperFamilySSF1182903.4E-8119167IPR003657WRKY domain
PROSITE profilePS513756.456481515IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.734516550IPR002885Pentatricopeptide repeat
PfamPF015350.44522547IPR002885Pentatricopeptide repeat
PfamPF130416.8E-9550598IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.772551586IPR002885Pentatricopeptide repeat
SuperFamilySSF1182903.27E-19736803IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-22737804IPR003657WRKY domain
SMARTSM007745.3E-31741804IPR003657WRKY domain
PfamPF031061.1E-22742803IPR003657WRKY domain
PROSITE profilePS5081118.096742800IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MKRHNNRYLP QSSPSDQPSF VSDNRSAMKE IAKGQSLVTQ LRAIVLPALQ ADQRSELVAQ  60
MFQNILDCSS KAITELQIHH QYDARADDAL VDDKKRVRRI SSDDCIKEEG AIANPHHQHK  120
RRSYYRCTYR QEQNCKATKT VQQQDDSTVT DNPVMYTVVY HGQHTCKDNN GVDSGSAESE  180
TNTQSSSDSR SSISATSTGP YGHQTSPDDN KPLDRCADLI TKNIVFDLKV GSIDGQVYGD  240
RKVFLCAHTR THETRRGAWD AISHIGDPGV LKVHISLVFF SSLFVENDGG QQNQFKAMDE  300
SYENLFMVPD MPEYLEDFTN IEMASALEIT SMNSPLMRLL AAAARRPKTP HRLLVALHRL  360
LSATTTTTSS SYDPTAQFLH PDHRHVLSLP ASLRHDALLA LARLLKTSPQ CHLALHAVSP  420
ARSSASPSST PLAARFAAAA RLAASASTLR PFAAILIAAL LPAASPDLLS WSSSYGSARV  480
RYGALRLALH AFLAAGMXAE ALHVLARVRR SGNTPSLSAL AALLRLLFRS GEVRAAWNVF  540
EEMATRGPRP SLTIFNSMIL GFCHRGMLRI ATGLLGVMGK KFGIVPDACS YNILIKGHYR  600
ILQLPSVTMA SCVSDRERAV KEVVQVYELI KVQQPLLLLH CSSLPPSSTT TQLAQSLLSE  660
ALRALNIALS VMKQQQQPSP APATPRSVKA EPQLSSPNPG VAPDDLEAIT STARRGKRRR  720
TTTTTMEGKT SSWVGLTTVP YEDGYEWRKY GEKKINGTSY TRSYFRCTYK DETGCLATKH  780
IQQKDSSDPP VFQVTYNNKH TCHSCTTKGP DSSERVINNP LINGHAASMV VKQEPPVLLL  840
PPLVEASVLP FVQTPPCQQE TPFPIVGMQQ QFCGTARYCH GDIPSTSSSC ISGESCDEYS  900
AGDMPLMMAA AEASAGDDPF YDLELLLLSR GRGEGGVAGV RVHQDPPASL SSDPPLLAAA  960
GSSTTTQLTP NLLSEALRAL NVALSVSCSS SLLVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-1347759711130pentatricopeptide repeat protein dPPR-U10
5i9h_A1e-1347759711130pentatricopeptide repeat protein dPPR-U8G2
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-16WRKY family protein