PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013135.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 382aa    MW: 40407 Da    PI: 4.8993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013135.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-21183235259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++p      +s+gC ++k+vers++dp++++ tY+geHnh 
  Do013135.1 183 SDVWAWRKYGQKPIKGSPYPS-----SSKGCAARKQVERSRSDPSTFILTYTGEHNHA 235
                 79****************997.....599****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012174.1E-92945No hitNo description
PRINTSPR012174.1E-95466No hitNo description
PRINTSPR012174.1E-995116No hitNo description
PRINTSPR012174.1E-9133150No hitNo description
Gene3DG3DSA:2.20.25.802.6E-21172237IPR003657WRKY domain
PROSITE profilePS5081125.499177237IPR003657WRKY domain
SuperFamilySSF1182904.32E-18181237IPR003657WRKY domain
SMARTSM007741.9E-25182236IPR003657WRKY domain
PfamPF031063.2E-16184234IPR003657WRKY domain
PRINTSPR012174.1E-9252264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDMEEDRCFN NWDLGAVVHL GCRRRLSPPP RQVDNPFAAF LAPQPQPQPH MEKPAVPALA  60
PEPATEPVAD AGWRFPDLCA GGGGQDGDEL LRALLAAHPP LPQPPLPTPT PTLPPPPPPQ  120
QQQQPVVTAV DVAPTQVRAA PAPALARAQP SGRPASGGVP RSKRRKNQVK KVVCHVPADG  180
SSSDVWAWRK YGQKPIKGSP YPSSSKGCAA RKQVERSRSD PSTFILTYTG EHNHAAPTHR  240
NSLAGTTRHK FPSSSAPQPP PPSVVVGAGA GPGDAQHQHQ QPSPSTTLTP TSTAELSPTT  300
PLRTPSMEEE DDEDEDELMV EDMEMAGEDE LLFLNTDGDD AAPLEPMSSL FDIVDEPFLS  360
SPWVSASTAP GEPATGAAGA GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-131842371977Probable WRKY transcription factor 4
2lex_A4e-131842371977Probable WRKY transcription factor 4
5w3x_B4e-13166238280Disease resistance protein RRS1
5w3x_D4e-13166238280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814242.11e-155probable WRKY transcription factor 27
TrEMBLA0A1E5VQQ10.0A0A1E5VQQ1_9POAL; WRKY transcription factor 22
STRINGSi017529m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-42WRKY family protein