PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012762.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 425aa    MW: 46045.9 Da    PI: 8.6665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012762.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-107094226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C +++rtG C++G +C+F+H+
  Do012762.1 70 GEPDCTYYLRTGLCRFGMSCRFNHP 94
                6899********************8 PP
2zf-CCCH38.42e-12116140327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+++++tGtCk+G++CkF H++
  Do012762.1 116 QPECQYYLKTGTCKFGPTCKFDHPR 140
                 799********************96 PP
3zf-CCCH31.62.8e-10162186327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C ++++tG+Cky ++CkF+H++
  Do012762.1 162 EKECAYYLKTGQCKYANTCKFHHPE 186
                 679********************96 PP
4zf-CCCH39.31.1e-12313338227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG Ck+G+ CkF+H++
  Do012762.1 313 DQPECQYYMKTGDCKFGAVCKFHHPR 338
                 689*********************96 PP
5zf-CCCH42.61e-13358384127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++elC+f++r+G+Ck+G++CkF H++
  Do012762.1 358 PGEELCKFYSRYGICKFGANCKFDHPM 384
                 689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-46895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1836896IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-77094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-57396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-47494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619113141IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10116140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61159187IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4159186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5159186IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4165185IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023311339IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5314338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4317337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591357385IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8357384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6358384IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11359384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5361382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDDAGRAPAP AAVTVSATAA PAPPPPSATS TAVDTSSPDP SALYGEGMWQ QMAMTSGATM  60
QPGPYPERSG EPDCTYYLRT GLCRFGMSCR FNHPSDRNMA IASARMKGEY PERVGQPECQ  120
YYLKTGTCKF GPTCKFDHPR EKAGIAGRVQ LNTLGYPLRP NEKECAYYLK TGQCKYANTC  180
KFHHPELFNA VPSSRGSPIY PSVHSSASAG PQSYTGTMAN WAFPRASFIP SPRWQSPSNY  240
GPMIVPQGLV QVPSWNSYTG QLQSPGAQQT YGTSQQGEAS AGNQGMLSPY RSSSFPVPQY  300
ALQRENVFPE RPDQPECQYY MKTGDCKFGA VCKFHHPRVR SLPPPDCVLT PMGLPIRPGE  360
ELCKFYSRYG ICKFGANCKF DHPMATPMGV YAYGFSASAS SASASTNVPM ARRLLGSPSG  420
SGYTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1E5VXP70.0A0A1E5VXP7_9POAL; Zinc finger CCCH domain-containing protein 12
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]