PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 27417.9 Da PI: 4.6017 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.6e-28 | 176 | 229 | 2 | 55 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 +DgynWrKYGqK+v+gse+ rsYY+Ct+++C++kkkvers d+++++i+Y+g Do012652.1 176 EDGYNWRKYGQKQVTGSENLRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGG 229 8***************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 19.795 | 170 | 228 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-23 | 173 | 228 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-21 | 174 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-26 | 175 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-20 | 176 | 228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MRIMFDAISV TNETSFVHPS SGGVEEVDGA TGGYDNIDGE GGEQLPVTPN VVSAGVHVLV 60 GDELLPEPVC LPDEHHLLDG HVLGLREEER DEDGHDDDPP CEELEEAELE VAEHGEEGLR 120 DAEGEEHVYG DVDALPRRPD LQREDLRRSV VVATNSNKAS SGDNSNGGGN SNTKLEDGYN 180 WRKYGQKQVT GSENLRSYYK CTYHSCSMKK KVERSLADGR ITQIVYKGGT TTRSRSRRAA 240 TPSVAPRRRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012652.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY683004 | 1e-103 | AY683004.1 Zea mays monosaccharide transport protein 1 (MST1) mRNA, complete cds. | |||
GenBank | BT067781 | 1e-103 | BT067781.1 Zea mays full-length cDNA clone ZM_BFc0156K13 mRNA, complete cds. | |||
GenBank | EU956633 | 1e-103 | EU956633.1 Zea mays clone 1568576 sugar transport protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5V1I9 | 2e-34 | A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26 | ||||
STRING | Pavir.J27870.1.p | 2e-33 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-22 | WRKY DNA-binding protein 33 |