PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012492.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 1348aa    MW: 144800 Da    PI: 4.6858
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012492.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.6e-17177228154
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                 + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++ 
  Do012492.1 177 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIA 228
                 579******************9...6445**********************9875 PP
2AP2538.5e-17609659153
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                 + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++
  Do012492.1 609 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAI 659
                 579******************9...6445**********************987 PP
3AP2461.3e-14881931153
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                 + ++GVr++   grWv+e+r+p ++g  +r +lg++  ae Aa+a++aa+++l
  Do012492.1 881 PVFRGVRRRGAAGRWVCEVRVPGKRG--ARLWLGTYVAAESAARAHDAAMLAL 931
                 579******************95544..**********************987 PP
4AP243.86.3e-1411611215155
         AP2    1 sgykGVrwdkkrgr..WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                  + ++GVr++ + g   Wv+e+r+p   g +  r +lg+f t+e Aa+a++aa+ +l g
  Do012492.1 1161 PVFRGVRRRGQAGTgrWVCELRVP---GrRGSRLWLGTFATPELAARAHDAAAIALSG 1215
                  579****999866566*******9...6455**********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-12177229IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18178239IPR016177DNA-binding domain
PROSITE profilePS5103221.087178237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-27178239IPR001471AP2/ERF domain
SMARTSM003808.0E-21178243IPR001471AP2/ERF domain
CDDcd000182.45E-10179239No hitNo description
PfamPF008471.5E-12609660IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-26610671IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17610671IPR016177DNA-binding domain
SMARTSM003806.0E-19610675IPR001471AP2/ERF domain
PROSITE profilePS5103220.943610669IPR001471AP2/ERF domain
CDDcd000185.82E-10611671No hitNo description
PfamPF008474.4E-10881931IPR001471AP2/ERF domain
PROSITE profilePS5103219.849882941IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-23882943IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-14882943IPR016177DNA-binding domain
SMARTSM003804.3E-13882947IPR001471AP2/ERF domain
CDDcd000181.06E-17883943No hitNo description
PfamPF008479.6E-911611215IPR001471AP2/ERF domain
PROSITE profilePS5103220.90311621223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2511621225IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1611621225IPR016177DNA-binding domain
SMARTSM003801.1E-1811621229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1348 aa     Download sequence    Send to blast
MLAIAGPGAC LNFGDSAWLL AVPASYASFA EVRHAVAEAV EDFLRREAAV PEDDAVSATS  60
STPSSPATAS HDGSRTEGEE SSDSSSPAAG VSAFELDAFD DMSWDLYYAS LAQGMLMEPP  120
SAVVEFGDAN IVDKEMIGES ASPCFSASTS SEHHQTVWTS PPKRPAGRTK FRETRHPVFR  180
GVRRRGNAGR WVCEVRVPGR RGCRLWLGTF DTAEAAARAH DAAMLAIAGP GACLNFADSA  240
GLLAVPTSYA SLAEVRHAVV EAVEDFQRRE AALLPEDDAR SATSSTPSSV ANDDCSGGGD  300
SEETSSATED SPFELDTFGD MSSDLYFASL AQAMLMEPPS TVSAFCDDVA DREEENADNL  360
QEVTGVEINL PQDSVGTSET SLDVLSKSDI NKLRVLQLQL RDTAPERIQL RSLRPESRNC  420
MRTDLVQEYE CRTKTEAKHQ LMLKIIHDQL EELGEEHNSL FEWNKKLVAS LKESRHATQN  480
AEEKAKGYHN SLNYVQIELE NIRQEKIALG TSLVRANEEK PTLQVKLEKE QKMGDGDVQL  540
FQSLVQVWEI GDAMAPLMDM EEMSADSSSP FSWTSASAST STSSEHQTVW TAPPKRPAGR  600
TKFRETRHPV FRGVRRRGNA GRWVCEVRVP GRRGCRLWLG TFDTAEAAAR AHDAAMLAIA  660
GGGACLNFAD SAWLLAVPAS YASLADVRHA VAEAVEDFQR REAAPSEDDA GSATSSAPSS  720
PVNSVEDEAY TDGEESSPAT EDSPFELDVL NDMSWDLYYA SMAQAMLMEP PSAVPAFGDD  780
GYANDGDHSA SQTLSSSTRQ ASKQLTPLAT PSSSSHLHLK TTAPAAMDMG RLEHSTSSSS  840
TSGSSSSSSQ NKAVWSPSFS SPQPPKKRPA GRTKFRETRH PVFRGVRRRG AAGRWVCEVR  900
VPGKRGARLW LGTYVAAESA ARAHDAAMLA LGRGVGCLNF PDSAWLLAVP PPSALSGLDT  960
ARRVALEAVA DFQRRFEAAA PVDEVTSSVS APSSLPEAFV PPATPLEHVP VKADEPAALD  1020
VGTFETDWFG DMDLDVYYAS LAEGLLMEPP PPPASGWEHG DCGDGGADSP QLTTRAELTS  1080
YLYILSGLLP LPPSKSELHC SIDPIPARPE PPHYYYQAAD LAMDTPSPPP SFVEHEEYRT  1140
VWSAPPKKPA GRTKFRETRH PVFRGVRRRG QAGTGRWVCE LRVPGRRGSR LWLGTFATPE  1200
LAARAHDAAA IALSGRAACL NFADSAWLLQ PLMHAAPAGA REVRDAVAEA VEAFRRRSLP  1260
ASAPSSPAAE TADEAKEDGG SPGATATPSA DVLFELDDVF GFGGMVDAGS YYASLAQGML  1320
VDAPAAAGTG GWWEDVDHGA VDISLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012492.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957402.11e-109dehydration-responsive element-binding protein 1H
SwissprotA2Z3899e-87DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
SwissprotQ64MA19e-87DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A1E5USY20.0A0A1E5USY2_9POAL; Dehydration-responsive element-binding protein 1A
STRINGSi030869m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-30dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oh SJ,Kwon CW,Choi DW,Song SI,Kim JK
    Expression of barley HvCBF4 enhances tolerance to abiotic stress in transgenic rice.
    Plant Biotechnol. J., 2007. 5(5): p. 646-56
    [PMID:17614953]
  3. Xiao BZ, et al.
    Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.
    Mol Plant, 2009. 2(1): p. 73-83
    [PMID:19529831]
  4. Mito T,Seki M,Shinozaki K,Ohme-Takagi M,Matsui K
    Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.
    Plant Biotechnol. J., 2011. 9(7): p. 736-46
    [PMID:21114612]
  5. Sun H, et al.
    ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.).
    Mol. Biotechnol., 2012. 52(2): p. 101-10
    [PMID:22161313]
  6. Huang J, et al.
    A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(3): p. 337-50
    [PMID:22930448]
  7. Lourenço T, et al.
    Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.
    Plant Mol. Biol., 2013. 83(4-5): p. 351-63
    [PMID:23780733]
  8. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  9. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  10. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  11. Paul S,Gayen D,Datta SK,Datta K
    Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.
    Plant Sci., 2015. 234: p. 133-43
    [PMID:25804816]
  12. Challam C,Ghosh T,Rai M,Tyagi W
    Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.
    J. Genet., 2015. 94(2): p. 231-8
    [PMID:26174670]
  13. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]
  14. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  15. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]
  16. Huo C, et al.
    Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice.
    Mol. Cell Proteomics, 2016. 15(4): p. 1397-411
    [PMID:26747563]
  17. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  18. Kudo M, et al.
    Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.
    Plant Biotechnol. J., 2017. 15(4): p. 458-471
    [PMID:27683092]
  19. He X, et al.
    A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.
    Plant Biol (Stuttg), 2017. 19(2): p. 257-267
    [PMID:27718311]