PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012467.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 291aa    MW: 31760 Da    PI: 8.0149
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012467.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.3e-134488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
       Do012467.1 44 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 88
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-163894IPR009057Homeodomain-like
PROSITE profilePS5129414.6283993IPR017930Myb domain
TIGRFAMsTIGR015579.8E-194291IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-64384IPR009057Homeodomain-like
SMARTSM007172.7E-104391IPR001005SANT/Myb domain
PfamPF002491.0E-104488IPR001005SANT/Myb domain
CDDcd001676.20E-84689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRGAAAVMAT PPMAVPAPAP APAPAAGVEE VRKVRKPYTI TKSRESWTEP EHDKFLEALQ  60
LFDRDWKKIE AYVGSKTVIQ IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA AHPYPQKASK  120
TVSQAVLSQQ LPPQREQGSG NANANAAVPS WDNTLVQPFS ASHVQGAVAT NNCCSSIESP  180
SGTWPTSEAV EQENVVPPLR AMPDFAQVYS FLGSIFDPDT SGHLQRLKAM DPIDVETVLL  240
LMRNLSTNLA SPDFEEHRKL LSSCSYGGDA HIKSEGMDNL GSPQSCHLPF M
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689651e-128BT068965.1 Zea mays full-length cDNA clone ZM_BFb0062F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966305.11e-180protein REVEILLE 6
SwissprotQ8H0W36e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1E5VNJ50.0A0A1E5VNJ5_9POAL; Protein REVEILLE 6
STRINGSi006824m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]