PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012419.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 651aa    MW: 70756.9 Da    PI: 9.0494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012419.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.1e-07166188123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cgk F+r  nL+ H+r H
  Do012419.1 166 HYCQVCGKGFKRDANLRMHMRAH 188
                 68*******************99 PP
2zf-C2H221.56.1e-07500522123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cgk F+r  nL+ H+r H
  Do012419.1 500 HYCQVCGKGFKRDANLRMHMRAH 522
                 68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-5165191No hitNo description
PROSITE profilePS5015712.653166193IPR007087Zinc finger, C2H2
SMARTSM003550.0034166188IPR015880Zinc finger, C2H2-like
PfamPF139120.0013166188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-6166192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SMARTSM00355160215248IPR015880Zinc finger, C2H2-like
SMARTSM0035533253275IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.0E-5499526No hitNo description
SMARTSM003550.0034500522IPR015880Zinc finger, C2H2-like
PfamPF139120.0013500522IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.653500527IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-6500526IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280502522IPR007087Zinc finger, C2H2
SMARTSM00355170547580IPR015880Zinc finger, C2H2-like
SMARTSM0035530585607IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MLPFSPGAIP HATDVLAYHV AVLRDKVQQL EPLVGMVVSP PNPHHHGRYE AAAMVAHSAC  60
SLLQEITAAA SRVAHRLSSN RATASNEQMF SAAHGAETLP FGNGPAALFS GAASTSTEAH  120
PAGSFSVPAA STSGLAGTGD LVLAGGDDTD AVVELDASYL LARYTHYCQV CGKGFKRDAN  180
LRMHMRAHGD EYKTSAALSN PRSSSAAATA ERRSYSCPAE GCRWNRRHPR FQPLKSVVCA  240
KNHYRRSHCP KLYACRRCDG KQFAVLSDLR THEKHCGELR WRCSCGTFSR KDKLLGHVAL  300
FATVSHIMNN PCFPLNPQGF QFFHQDVNHG VLPISHGAAA ADSVAYHVAV LRDKVQQLEP  360
LVHMVVSPAA HHLGRPEDSV MAASSACTVL QEIAAAASAV AHRLSYNRGR PIDNNHEQVF  420
AAARGADTSP FRHETAALFG VASTSARTAQ PAALERTESF SLSAASSANG RSNRELGRGG  480
DAAPEVVELD ASYLLARYTH YCQVCGKGFK RDANLRMHMR AHGDEYKTMA ALSNPSGSGA  540
TSERRSYSCP ADGCRWNQRH PRFQPLKSMV CAKNHYRRSH CPKMYSCRRC DDKQFAVLSD  600
LRTHEKHCGE LRWRCSCGTF FSRKDKLMGH VALFTTGHAP VPIAAAPTER S
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.11e-109protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1E5W7080.0A0A1E5W708_9POAL; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGOGLUM04G01880.11e-112(Oryza glumipatula)
STRINGORUFI04G02970.11e-112(Oryza rufipogon)
STRINGOS04T0165200-011e-111(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-82C2H2 family protein