PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012040.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 290aa    MW: 32110.1 Da    PI: 8.2494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012040.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06262284223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C+k F+++ +L+ H  + H
  Do012040.1 262 VCPKCSKAFRDPVLLVEHVERdH 284
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.83E-13650No hitNo description
PROSITE profilePS510397.6011056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.9E-101049IPR000058Zinc finger, AN1-type
SMARTSM001540.00271352IPR000058Zinc finger, AN1-type
PfamPF014281.1E-131350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.28E-993143No hitNo description
PROSITE profilePS510397.77498145IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.27224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767261289IPR007087Zinc finger, C2H2
SMARTSM003558261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVDDCHQ IDFLPFTCDR CDNVFCLQHR SYTTHQCPNA NLKDVTVLIC  60
PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RKVDSGFPFV SMLRRSQKAE TRPNSSNNNS SSWWSSSLVN  180
AATNFKSSAE AGMQKLSTAT SQAFQKAKDG ISPNSSSSSG DLVEECVHCP ARFSTVGALI  240
EHVEKSHQTN QQPSRGRVTI DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958078.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-170SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6QU760.0A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]