PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011689.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 201aa MW: 22477.9 Da PI: 4.8822

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011689.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.4	2e-34	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGf+F P+deelvv++L++k++ +++ ++i++v +++++Pw+L+ k+ + ++wyfFs++ ++r+t +gyW++ d+ v+s +g + Do011689.1 7 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DIIPTVLLNHYDPWELNDKALQAGNQWYFFSHAT--------QSRVTPNGYWSSICADEMVKS-GGCN 95 79***********************999.99**********966667789**975........5799***********99.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvf g+ ++g++t+W+mhey+l Do011689.1 96 IGLKKTLVFSMGEPSEGTETNWIMHEYHL 124 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-45	4	163	IPR003441	NAC domain
PROSITE profile	PS51005	40.266	7	165	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGGAPNLPPG FHFFPSDEEL VVHFLRRKAS LLPCQPDIIP TVLLNHYDPW ELNDKALQAG 60 NQWYFFSHAT QSRVTPNGYW SSICADEMVK SGGCNIGLKK TLVFSMGEPS EGTETNWIMH 120 EYHLPDGRKE SSSSTSTSSS RKLHGNKGHS NTESNNWVIC RVFDSTSGSQ VNFHEEGMEL 180 SCLDEVFLSL DDYDEVSLSN N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-36	6	170	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-36	6	170	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-36	6	170	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-36	6	170	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-36	6	170	19	173	NAC domain-containing protein 19
3swm_B	2e-36	6	170	19	173	NAC domain-containing protein 19
3swm_C	2e-36	6	170	19	173	NAC domain-containing protein 19
3swm_D	2e-36	6	170	19	173	NAC domain-containing protein 19
3swp_A	2e-36	6	170	19	173	NAC domain-containing protein 19
3swp_B	2e-36	6	170	19	173	NAC domain-containing protein 19
3swp_C	2e-36	6	170	19	173	NAC domain-containing protein 19
3swp_D	2e-36	6	170	19	173	NAC domain-containing protein 19
4dul_A	3e-36	6	170	16	170	NAC domain-containing protein 19
4dul_B	3e-36	6	170	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011689.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823281.1	1e-132	NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	4e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1E5VXU2	1e-148	A0A1E5VXU2_9POAL; NAC domain-containing protein 104
STRING	Pavir.J14631.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-64	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]