PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do011549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 76aa MW: 8498.59 Da PI: 10.7567 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 73.8 | 6e-23 | 30 | 66 | 134 | 170 |
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eeiqrik+snP+ishreafsaaaknWah+P++hfgl Do011549.1 30 REEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 66 7**********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.3E-20 | 30 | 66 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 76 aa Download sequence Send to blast |
MFFQLQRKDS VSRQHTIDSS KLLLLPNINR EEIQRIKTSN PEISHREAFS AAAKNWAHLP 60 RLHFGLSVAD GGGGSS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do011549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU963149 | 7e-56 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. | |||
GenBank | EU970658 | 7e-56 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. | |||
GenBank | KJ727990 | 7e-56 | KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955497.1 | 8e-27 | protein YABBY 1 | ||||
Refseq | XP_025802461.1 | 7e-27 | protein YABBY 1-like | ||||
Swissprot | Q7XIM7 | 5e-23 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A1E5W7D6 | 1e-48 | A0A1E5W7D6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03779.1.p | 3e-26 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-18 | YABBY family protein |