PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 93aa MW: 10115.5 Da PI: 11.9721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.6 | 8.2e-15 | 20 | 63 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 kGVr+++ +g+W+AeIrdp + r++ g+f + e Aa a++ + Do011296.1 20 NKGVRRRP-WGKWAAEIRDPI----KgVRVWPGTFPSDEAAALAYDPTA 63 59******.**********72....46**********888888888555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.439 | 19 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-7 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.75E-16 | 21 | 72 | No hit | No description |
SMART | SM00380 | 1.6E-13 | 21 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-15 | 21 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-10 | 21 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-21 | 21 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-7 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
AAALGAGRAV AEQDPEGAAN KGVRRRPWGK WAAEIRDPIK GVRVWPGTFP SDEAAALAYD 60 PTARDIRRPR SRSWRLGWVM AGRPAGAPLA RWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 16 | 71 | 2 | 58 | ATERF1 |
3gcc_A | 2e-13 | 16 | 71 | 2 | 58 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068551 | 5e-48 | BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds. | |||
GenBank | EU955715 | 5e-48 | EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds. | |||
GenBank | EU955981 | 5e-48 | EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds. | |||
GenBank | KJ727612 | 5e-48 | KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387702.1 | 3e-16 | uncharacterized protein LOC112288086 | ||||
Refseq | XP_026394553.1 | 1e-16 | ethylene-responsive transcription factor ERF109-like | ||||
Refseq | XP_026434605.1 | 1e-16 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q8H0T5 | 1e-16 | ERF73_ARATH; Ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A1E5W2M9 | 6e-56 | A0A1E5W2M9_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | EFJ06779 | 2e-17 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5020 | 37 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 5e-18 | ERF family protein |
Publications ? help Back to Top | |||
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