PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010973.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 288aa    MW: 29957.5 Da    PI: 4.7679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010973.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.3e-095272346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia+ ++ gRt++++k++w++
       Do010973.1  5 RWSVIAAQLP-GRTDNDVKNHWNT 27
                     5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.87133IPR017930Myb domain
SuperFamilySSF466899.79E-8434IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-12540IPR009057Homeodomain-like
PfamPF002499.8E-7527IPR001005SANT/Myb domain
CDDcd001672.80E-6529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MCTCRWSVIA AQLPGRTDND VKNHWNTKLK KKLSGMGIDP VTHKSFSHLM AEIATTLAPP  60
QVAHLAEAAL GCFKDEMLHL LTKKRPTDFP SPAVPDMSMA AGAASAGMGA AAALAAPCGF  120
PAAPPQADDT IERIKLGLSR AIMSEPGAVA GAATDKQQQP WAPADMPDGL AGMYAAFNPA  180
AHGQEEFRYD NGTMPEYVLG GGGEADQGTS MWSHSHQSLY SGSSGTEAAA RPAQALPEKG  240
NDSVGSSGGD EEADDAKDGG KGGSDMSGFF GSDCVLWDLP DELKNHMV
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342381e-135BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds.
GenBankBT0393211e-135BT039321.1 Zea mays full-length cDNA clone ZM_BFc0005K19 mRNA, complete cds.
GenBankBT0394221e-135BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds.
GenBankBT0406701e-135BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds.
GenBankBT0432401e-135BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds.
GenBankBT0549881e-135BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds.
GenBankKJ7275781e-135KJ727578.1 Zea mays clone pUT5438 MYB transcription factor (MYB84) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975922.11e-166transcription factor MYB80
SwissprotQ7XQN11e-114MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A1E5WCG90.0A0A1E5WCG9_9POAL; Transcription factor MYB80
STRINGSi012130m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.17e-48myb domain protein 103