PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do010830.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 804aa MW: 85858.1 Da PI: 4.5982

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010830.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	69.3	1e-21	10	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.sgyWk..atgkdkevlsk. 95 lppG+ F P+de v +yL +++ g +l+++ + + d +++ Pw+L + ++++++ +fF++ + + +g+r++r+ + g W+ +t + + l+ Do010830.1 10 LPPGILFAPEDEVAVEHYLLPRLLGWRLPVDGLVLDDDPLSAPPWELL-ERNGRKEDAFFFAEGQARCGKGTRQRRTCSgGGWWEgqKTCAEGDKLRVp 107 79**************************99999********7.445677899**************66615566532333333333336 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+ + kk L f+ g k +t Wvmhey++ Do010830.1 108 gggGQETSWRKKALNFHGGGGGKKGSTGWVMHEYAV 143 88777889*****99888888*******86 PP
2	NAM	73.4	5.6e-23	180	311	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlsk. 95 lppGf F P+d ++v +yL +++ g+ l+l+ i + d +++ Pw+L + ++ +++ +fF+ + +++g+r++r + g+W+ t d e l+ Do010830.1 180 LPPGFLFAPEDGDVVAHYLLRRILGQALPLDGLILDDDPLSSPPWELLE-RNGCKDDAFFFAMGQALNSKGSRQKRtCAGGGFWNgeRTCVDGEKLRVp 277 79**************************999**********73.34556799**************77789933333344444436 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge+ + kk L f +g ++ +t Wvmhey++ Do010830.1 278 dldGGEVAWRKKALSFQEGGEKG--STGWVMHEYAI 311 78888999*****9887766..8******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-30	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	27.212	10	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-13	11	142	IPR003441	NAC domain
SuperFamily	SSF101941	3.66E-30	174	330	IPR003441	NAC domain
PROSITE profile	PS51005	29.211	180	330	IPR003441	NAC domain
Pfam	PF02365	8.8E-15	181	310	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MAAAARAPDL PPGILFAPED EVAVEHYLLP RLLGWRLPVD GLVLDDDPLS APPWELLERN 60 GRKEDAFFFA EGQARCGKGT RQRRTCSGGG WWEGQKTCAE GDKLRVPGGG GQETSWRKKA 120 LNFHGGGGGK KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR LSSFGRKQIG GMEVPRKLGL 180 PPGFLFAPED GDVVAHYLLR RILGQALPLD GLILDDDPLS SPPWELLERN GCKDDAFFFA 240 MGQALNSKGS RQKRTCAGGG FWNGERTCVD GEKLRVPDLD GGEVAWRKKA LSFQEGGEKG 300 STGWVMHEYA ITAPEHLAEA QLRLYRIRFS GHGKKRKRGD EESCADEAAP TAARRRVAED 360 ALLEFSTSEP SSQPICSSMV ITDADQQAAS VTIPANQDLT PGTTVDTSWD GFLDNFDSFY 420 IDELLRSIGD SPSTDPCVLP AVTDPGAYLH ADAASSSFSS QTVAAASPYN GVGVGLVTPS 480 APAIYASPVA ACKVLCSPQR LLEDGEVAEE KDVGAAPVAT EEFAETGSSP SSSSSSRSSG 540 PSSSSGCSSG GSCSDSSDSD SSDSDSDDDE SVTSSPAPAV LSKTDASPVT VPVSYTHLDV 600 YKRQPSSSSG CSSGGSCSDS SDSDSSDSDS DDDESVTSSP APAVLSKTDA SPVTVPCKVL 660 CSLPCSSSVF EDGEIEEDEK GGSASPATAE KLSDIPAPVL LRQPLEQHQA AQDHNLPLPQ 720 AEYRDLIARG HAKKRRLSNP ERQRAYEELE EMERNTKPIC DWIHPMQLRQ LGITQVEYAV 780 TSERRVPGRG CPVQRLLGLF LKAE

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MAAAARAPDL PPGILFAPED EVAVEHYLLP RLLGWRLPVD GLVLDDDPLS APPWELLERN  60
GRKEDAFFFA EGQARCGKGT RQRRTCSGGG WWEGQKTCAE GDKLRVPGGG GQETSWRKKA  120
LNFHGGGGGK KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR LSSFGRKQIG GMEVPRKLGL  180
PPGFLFAPED GDVVAHYLLR RILGQALPLD GLILDDDPLS SPPWELLERN GCKDDAFFFA  240
MGQALNSKGS RQKRTCAGGG FWNGERTCVD GEKLRVPDLD GGEVAWRKKA LSFQEGGEKG  300
STGWVMHEYA ITAPEHLAEA QLRLYRIRFS GHGKKRKRGD EESCADEAAP TAARRRVAED  360
ALLEFSTSEP SSQPICSSMV ITDADQQAAS VTIPANQDLT PGTTVDTSWD GFLDNFDSFY  420
IDELLRSIGD SPSTDPCVLP AVTDPGAYLH ADAASSSFSS QTVAAASPYN GVGVGLVTPS  480
APAIYASPVA ACKVLCSPQR LLEDGEVAEE KDVGAAPVAT EEFAETGSSP SSSSSSRSSG  540
PSSSSGCSSG GSCSDSSDSD SSDSDSDDDE SVTSSPAPAV LSKTDASPVT VPVSYTHLDV  600
YKRQPSSSSG CSSGGSCSDS SDSDSSDSDS DDDESVTSSP APAVLSKTDA SPVTVPCKVL  660
CSLPCSSSVF EDGEIEEDEK GGSASPATAE KLSDIPAPVL LRQPLEQHQA AQDHNLPLPQ  720
AEYRDLIARG HAKKRRLSNP ERQRAYEELE EMERNTKPIC DWIHPMQLRQ LGITQVEYAV  780
TSERRVPGRG CPVQRLLGLF LKAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	9	311	12	140	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	338	GKKRKRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	0.0	uncharacterized protein LOC112890817
TrEMBL	A0A1E5VNS9	0.0	A0A1E5VNS9_9POAL; Uncharacterized protein
STRING	Si019248m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	2e-09	NAC domain containing protein 50