PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010675.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 582aa    MW: 62030.5 Da    PI: 6.4646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010675.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33384442159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Do010675.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 442
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-37369444IPR003657WRKY domain
SuperFamilySSF1182905.75E-29376444IPR003657WRKY domain
PROSITE profilePS5081137.539379444IPR003657WRKY domain
SMARTSM007744.0E-38384443IPR003657WRKY domain
PfamPF031062.2E-25385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MAGTSNHGSL LEEWLPPPTP SPRTLMSSFL NEEFSSGPFS NLFSEHCTTK PHDQSEKSRE  60
PVSLSDEVPA QAVKDRFQKG FSLEPNLFGA NQKSNSHGGL AERRAARAGF SVPKIDTSRV  120
GSSAAIRSPV SIPPGLSPTT LLESPVFLYN NMAQPSPTTG TLPFFMASND KSTIPPAAKI  180
TEDSTFDNDV FSFQPYLGSK QSSFSTAEKE YSAYNQNQSL SNIHQQESSL QSSFTAVKDN  240
TNATIVKVKA SDSMLGNSHY SADQQQDDET NQNAQGEGVK SGPAACVPVS THGDTSLMES  300
QDAVDVSSTL SNEEDERATH GTVSIECEGD EDETESKRRK LDALGTSTIT TAVAASTIDM  360
GAAASRAVRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH  420
VERASHDLKS VITTYEGKHN HEVPAARNSG QAGSSSANAP SASQGSSSHR RQEPAQASFA  480
HFGATAPFGS FVLPPSGQLG PATGNFRFGM VPPGMAIPMP SLGSLAPTKM VGNSSAMQGY  540
PGLMMPGQPK AEPVSHSGFP AANAAPSAYQ QMMSRPPFGH QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38375445878Probable WRKY transcription factor 4
2lex_A5e-38375445878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957146.10.0probable WRKY transcription factor 2
RefseqXP_022680444.10.0probable WRKY transcription factor 2
TrEMBLA0A1E5WJ690.0A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRINGSi029342m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-60WRKY DNA-binding protein 2